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| 06/05/2016 | 16:00 | FK Ústí nad Labem | - | FK Baník Sokolov | 1:1 (1:0) | |
| 07/05/2016 | 09:15 | FK Pardubice | - | Slavoj Vyšehrad | 0:1 (0:0) | |
| 16:00 | MFK Frýdek-Místek, a.s. | - | Dynamo České Budějovice | 1:1 (0:1) | ||
| 16:00 | FK MAS Táborsko | - | 1. SC Znojmo | 2:1 (1:0) | ||
| 08/05/2016 | 09:15 | Sigma Olomouc B | - | FC Graffin Vlašim | 1:0 (0:0) | |
| 16:00 | FC Hradec Králové | - | MFK Karviná | 0:2 (0:1) | ||
| 16:00 | FK Varnsdorf | - | SFC Opava | 0:0 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC Hradec Králové | 25 | 14 | 8 | 3 | 40:15 | 25 | 50 |
| 2 |
|
MFK Karviná | 24 | 14 | 7 | 3 | 41:13 | 28 | 49 |
| 3 |
|
1. SC Znojmo | 24 | 15 | 4 | 5 | 49:24 | 25 | 49 |
| 4 |
|
FK Baník Sokolov | 24 | 9 | 11 | 4 | 28:19 | 9 | 38 |
| 5 |
|
FK Ústí nad Labem | 25 | 8 | 11 | 6 | 36:28 | 8 | 35 |
| 6 |
|
FK MAS Táborsko | 25 | 7 | 11 | 7 | 31:31 | 0 | 32 |
| 7 |
|
FK Pardubice | 24 | 8 | 8 | 8 | 24:24 | 0 | 32 |
| 8 |
|
SFC Opava | 24 | 5 | 13 | 6 | 29:30 | -1 | 28 |
| 9 |
|
Dynamo České Budějovice | 24 | 5 | 13 | 6 | 34:39 | -5 | 28 |
| 10 |
|
FC Graffin Vlašim | 24 | 6 | 8 | 10 | 24:29 | -5 | 26 |
| 11 |
|
MFK Frýdek-Místek, a.s. | 24 | 6 | 8 | 10 | 24:32 | -8 | 26 |
| 12 |
|
FK Fotbal Třinec | 24 | 6 | 7 | 11 | 28:38 | -10 | 25 |
| 13 |
|
FK Varnsdorf | 24 | 5 | 10 | 9 | 25:40 | -15 | 25 |
| 14 |
|
Slavoj Vyšehrad | 24 | 5 | 5 | 14 | 17:43 | -26 | 20 |
| 15 |
|
Sigma Olomouc B | 25 | 5 | 4 | 16 | 22:47 | -25 | 19 |
| Promotion | |
| Relegation |
