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| 1st(1st leg) | Slovan Liberec | - | FK Baumit Jablonec | 4:3 (2:1) | ||
| 2nd (2nd leg) | FK Baumit Jablonec | - | Slovan Liberec | 2:0 (0:0) | ||
| 1st(1st leg): 24/04/2013 17:30 | 2nd (2nd leg): 08/05/2013 16:15 | Winner: FK Baumit Jablonec | ||||
| 1st(1st leg) | FK Mladá Boleslav | - | AC Sparta Praha | 1:1 (0:0) | ||
| 2nd (2nd leg) | AC Sparta Praha | - | FK Mladá Boleslav | 1:2 (1:0) | ||
| 1st(1st leg): 01/05/2013 15:00 | 2nd (2nd leg): 08/05/2013 16:10 | Winner: FK Mladá Boleslav | ||||
