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| 1st(1st leg) | Deportivo Malacateco | - | CSD Municipal | 1:0 (0:0) | ||
| 2nd (2nd leg) | CSD Municipal | - | Deportivo Malacateco | 2:0 (1:0) | ||
| 1st(1st leg): 07/12/2016 18:00 | 2nd (2nd leg): 10/12/2016 21:00 | Winner: CSD Municipal | ||||
| 1st(1st leg) | Comunicaciones | - | Antigua GFC | 1:0 (0:0) | ||
| 2nd (2nd leg) | Antigua GFC | - | Comunicaciones | 1:0 (0:0) | ||
| 1st(1st leg): 09/12/2016 02:00 | 2nd (2nd leg): 11/12/2016 17:30 | |||||
