| 3. Round | 11/09/2016 | PAOK Saloniki | - | Panetolikos | 2:1 | ||||
| 5. Round | 25/09/2016 | PAOK Saloniki | - | Xanthi FC | 0:0 | ||||
| 12. Round | 28/11/2016 | PAOK Saloniki | - | Atromitos | 3:4 | ||||
| 1. Round | 03/01/2017 | Levadiakos | - | PAOK Saloniki | 0:1 |  |
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| 2. Round | 08/01/2017 | PAOK Saloniki | - | PAS Giannina | 0:1 | ||||
| 16. Round | 19/01/2017 | PAOK Saloniki | - | Levadiakos | 3:0 | ||||
| 18. Round | 29/01/2017 | Panetolikos | - | PAOK Saloniki | 0:1 |  |
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| 21. Round | 19/02/2017 | PAOK Saloniki | - | Veria FC | 4:0 | |
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| 22. Round | 26/02/2017 | AEP Iraklis FC | - | PAOK Saloniki | 1:1 | |
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| 25. Round | 19/03/2017 | PAOK Saloniki | - | Panionios GSS | 1:0 | |
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| 28. Round | 09/04/2017 | PAOK Saloniki | - | Panathinaikos | 3:0 |
Greece