| Group B | 13/09/2016 | SL Benfica [Youth] | - | Beşiktaş [Youth] | 0:0 | ||||
| Group B | 28/09/2016 | SSC Napoli [Youth] | - | SL Benfica [Youth] | 2:3 | ||||
| Group B | 19/10/2016 | Dinamo Kiev [Youth] | - | SL Benfica [Youth] | 2:1 | ||||
| Group B | 01/11/2016 | SL Benfica [Youth] | - | Dinamo Kiev [Youth] | 1:2 | ||||
| Group B | 06/12/2016 | SL Benfica [Youth] | - | SSC Napoli [Youth] | 2:0 | ||||
| Play-offs | 07/02/2017 | FC Midtjylland [Youth] | - | SL Benfica [Youth] | 5:6 pso | ||||
| Round of 16 | 21/02/2017 | PSV Eindhoven [Youth] | - | SL Benfica [Youth] | 4:5 pso | ||||
| Quarter-finals | 07/03/2017 | CSKA Moskva [Youth] | - | SL Benfica [Youth] | 0:2 | ||||
| Semi-finals | 21/04/2017 | Real Madrid [Youth] | - | SL Benfica [Youth] | 2:4 |
Portugal