| 3. Round | 28/08/2016 | CFC Hertha 06 | - | Hansa Rostock II | 4:1 | ||||
| 4. Round | 11/09/2016 | Hansa Rostock II | - | Germania Schöneiche | 3:3 |  |
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| 5. Round | 18/09/2016 | VSG Altglienicke | - | Hansa Rostock II | 1:2 | ||||
| 6. Round | 24/09/2016 | Hansa Rostock II | - | Optik Rathenow | 2:3 | ||||
| 7. Round | 02/10/2016 | Malchower SV 90 | - | Hansa Rostock II | 1:1 | ||||
| 9. Round | 23/10/2016 | Victoria Seelow | - | Hansa Rostock II | 5:1 |  |
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| 12. Round | 19/11/2016 | FC Mecklenburg Schwerin | - | Hansa Rostock II | 2:2 | ||||
| 16. Round | 18/02/2017 | Hansa Rostock II | - | SV Altlüdersdorf | 0:3 | ||||
| 22. Round | 08/04/2017 | Hansa Rostock II | - | Malchower SV 90 | 0:2 | |
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| 25. Round | 29/04/2017 | SV Lichtenberg 47 | - | Hansa Rostock II | 5:1 | ||||
| 26. Round | 07/05/2017 | FC Strausberg | - | Hansa Rostock II | 1:0 | |
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| 28. Round | 21/05/2017 | 1. FC Frankfurt (Oder) | - | Hansa Rostock II | 2:3 |  |
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| 29. Round | 28/05/2017 | Hansa Rostock II | - | SV Grün-Weiß Brieselang | 9:3 | ||||
| 30. Round | 03/06/2017 | Hertha Zehlendorf | - | Hansa Rostock II | 3:2 |
Germany