| 27. Round | 09/03/2013 | Viktoria Aschaffenburg | - | SC Eltersdorf | 1:0 |  |
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| 28. Round | 15/03/2013 | SC Eltersdorf | - | TSV 1896 Rain | 2:2 | ||||
| 29. Round | 22/03/2013 | SV Seligenporten | - | SC Eltersdorf | 3:1 | ||||
| 30. Round | 28/03/2013 | SC Eltersdorf | - | Würzburger Kickers | 1:3 | |
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| 31. Round | 06/04/2013 | FC Augsburg II | - | SC Eltersdorf | 1:1 | |
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| 15. Round | 09/04/2013 | TSV 1860 München II | - | SC Eltersdorf | 3:0 | |
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| 32. Round | 12/04/2013 | SC Eltersdorf | - | SpVgg Bayern Hof | 5:2 | ||||
| 25. Round | 16/04/2013 | FC Ismaning | - | SC Eltersdorf | 0:0 | ||||
| 33. Round | 20/04/2013 | SV Heimstetten | - | SC Eltersdorf | 2:3 | ||||
| 34. Round | 26/04/2013 | SC Eltersdorf | - | TSV 1860 München II | 0:1 | ||||
| 26. Round | 30/04/2013 | SC Eltersdorf | - | SpVgg Greuther Fürth II | 1:3 | |
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| 36. Round | 11/05/2013 | FC Memmingen | - | SC Eltersdorf | 0:0 | ||||
| 37. Round | 18/05/2013 | SC Eltersdorf | - | FC Ingolstadt 04 II | 0:1 | |
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| 38. Round | 25/05/2013 | TSV 1860 Rosenheim | - | SC Eltersdorf | 4:0 |
Germany