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| 1st(1st leg) | AC Sparta Praha | - | FC Steaua Bucureşti | 1:1 (1:0) | ||
| 2nd (2nd leg) | FC Steaua Bucureşti | - | AC Sparta Praha | 2:0 (1:0) | ||
| 1st(1st leg): 26/07/2016 19:00 | 2nd (2nd leg): 03/08/2016 18:45 | Winner: FC Steaua Bucureşti | ||||
| 1st(1st leg) | BATE Borisov | - | Dundalk FC | 1:0 (0:0) | ||
| 2nd (2nd leg) | Dundalk FC | - | BATE Borisov | 3:0 (1:0) | ||
| 1st(1st leg): 26/07/2016 19:00 | 2nd (2nd leg): 02/08/2016 20:00 | Winner: Dundalk FC | ||||
| 1st(1st leg) | PFC Ludogorets Razgrad | - | Crvena Zvezda | 2:2 (1:0) | ||
| 2nd (2nd leg) | Crvena Zvezda | - | PFC Ludogorets Razgrad | 2:4 (1:2, 2:2) aet | ||
| 1st(1st leg): 26/07/2016 19:00 | 2nd (2nd leg): 02/08/2016 19:30 | Winner: PFC Ludogorets Razgrad | ||||
| 1st(1st leg) | FK Partizani | - | RB Salzburg | 0:1 (0:0) | ||
| 2nd (2nd leg) | RB Salzburg | - | FK Partizani | 2:0 (0:0) | ||
| 1st(1st leg): 26/07/2016 19:15 | 2nd (2nd leg): 03/08/2016 19:30 | Winner: RB Salzburg | ||||
| 1st(1st leg) | Viktoria Plzeň | - | Qarabağ FK | 0:0 (0:0) | ||
| 2nd (2nd leg) | Qarabağ FK | - | Viktoria Plzeň | 1:1 (1:0) | ||
| 1st(1st leg): 26/07/2016 19:15 | 2nd (2nd leg): 02/08/2016 17:30 | Winner: Viktoria Plzeň | ||||
| 1st(1st leg) | FK Rostov | - | RSC Anderlecht | 2:2 (1:1) | ||
| 2nd (2nd leg) | RSC Anderlecht | - | FK Rostov | 0:2 (0:1) | ||
| 1st(1st leg): 26/07/2016 19:30 | 2nd (2nd leg): 03/08/2016 19:45 | Winner: FK Rostov | ||||
| 1st(1st leg) | AFC Ajax | - | PAOK Saloniki | 1:1 (0:1) | ||
| 2nd (2nd leg) | PAOK Saloniki | - | AFC Ajax | 1:2 (1:1) | ||
| 1st(1st leg): 26/07/2016 19:45 | 2nd (2nd leg): 03/08/2016 19:30 | Winner: AFC Ajax | ||||
| 1st(1st leg) | Shakhtar Donetsk | - | BSC Young Boys | 2:0 (1:0) | ||
| 2nd (2nd leg) | BSC Young Boys | - | Shakhtar Donetsk | 4:2 (0:0, 2:0, 2:0) pso | ||
| 1st(1st leg): 26/07/2016 19:45 | 2nd (2nd leg): 03/08/2016 19:15 | Winner: BSC Young Boys | ||||
| 1st(1st leg) | Dinamo Zagreb | - | Dinamo Tbilisi | 2:0 (2:0) | ||
| 2nd (2nd leg) | Dinamo Tbilisi | - | Dinamo Zagreb | 0:1 (0:1) | ||
| 1st(1st leg): 26/07/2016 19:45 | 2nd (2nd leg): 02/08/2016 18:00 | Winner: Dinamo Zagreb | ||||
| 1st(1st leg) | FK Astana | - | Celtic FC | 1:1 (1:0) | ||
| 2nd (2nd leg) | Celtic FC | - | FK Astana | 2:1 (1:0) | ||
| 1st(1st leg): 27/07/2016 15:00 | 2nd (2nd leg): 03/08/2016 19:45 | Winner: Celtic FC | ||||
| 1st(1st leg) | Rosenborg BK | - | APOEL Nikosia | 2:1 (2:0) | ||
| 2nd (2nd leg) | APOEL Nikosia | - | Rosenborg BK | 3:0 (0:0) | ||
| 1st(1st leg): 27/07/2016 18:15 | 2nd (2nd leg): 02/08/2016 18:00 | Winner: APOEL Nikosia | ||||
| 1st(1st leg) | Astra Giurgiu | - | FC København | 1:1 (1:0) | ||
| 2nd (2nd leg) | FC København | - | Astra Giurgiu | 3:0 (3:0) | ||
| 1st(1st leg): 27/07/2016 18:30 | 2nd (2nd leg): 03/08/2016 18:45 | Winner: FC København | ||||
| 1st(1st leg) | Fenerbahçe | - | AS Monaco | 2:1 (1:1) | ||
| 2nd (2nd leg) | AS Monaco | - | Fenerbahçe | 3:1 (2:0) | ||
| 1st(1st leg): 27/07/2016 19:30 | 2nd (2nd leg): 03/08/2016 19:45 | Winner: AS Monaco | ||||
| 1st(1st leg) | AS Trenčín | - | Legia Warszawa | 0:1 (0:0) | ||
| 2nd (2nd leg) | Legia Warszawa | - | AS Trenčín | 0:0 (0:0) | ||
| 1st(1st leg): 27/07/2016 19:30 | 2nd (2nd leg): 03/08/2016 19:45 | Winner: Legia Warszawa | ||||
| 1st(1st leg) | Olympiakos Piraeus | - | Hapoel Be'er Sheva | 0:0 (0:0) | ||
| 2nd (2nd leg) | Hapoel Be'er Sheva | - | Olympiakos Piraeus | 1:0 (0:0) | ||
| 1st(1st leg): 27/07/2016 19:45 | 2nd (2nd leg): 03/08/2016 19:00 | Winner: Hapoel Be'er Sheva | ||||
