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| 1st(1st leg) | Austria Wien | - | SL Benfica | 1:1 (1:1) | ||
| 2nd (2nd leg) | SL Benfica | - | Austria Wien | 3:0 (2:0) | ||
| 1st(1st leg): 08/08/2006 19:45 | 2nd (2nd leg): 22/08/2006 20:15 | Winner: SL Benfica | ||||
| 1st(1st leg) | Dinamo Zagreb | - | Arsenal FC | 0:3 (0:0) | ||
| 2nd (2nd leg) | Arsenal FC | - | Dinamo Zagreb | 2:1 (0:1) | ||
| 1st(1st leg): 08/08/2006 20:05 | 2nd (2nd leg): 23/08/2006 20:05 | Winner: Arsenal FC | ||||
| 1st(1st leg) | CSKA Moskva | - | MFK Ružomberok | 3:0 (0:0) | ||
| 2nd (2nd leg) | MFK Ružomberok | - | CSKA Moskva | 0:2 (0:2) | ||
| 1st(1st leg): 09/08/2006 17:00 | 2nd (2nd leg): 23/08/2006 19:00 | Winner: CSKA Moskva | ||||
| 1st(1st leg) | Dinamo Kiev | - | Fenerbahçe | 3:1 (1:0) | ||
| 2nd (2nd leg) | Fenerbahçe | - | Dinamo Kiev | 2:2 (1:2) | ||
| 1st(1st leg): 09/08/2006 17:00 | 2nd (2nd leg): 23/08/2006 19:00 | Winner: Dinamo Kiev | ||||
| 1st(1st leg) | Lille OSC | - | FK Rabotnički | 3:0 (0:0) | ||
| 2nd (2nd leg) | FK Rabotnički | - | Lille OSC | 0:1 (0:1) | ||
| 1st(1st leg): 09/08/2006 17:00 | 2nd (2nd leg): 23/08/2006 19:00 | Winner: Lille OSC | ||||
| 1st(1st leg) | Shakhtar Donetsk | - | Legia Warszawa | 1:0 (1:0) | ||
| 2nd (2nd leg) | Legia Warszawa | - | Shakhtar Donetsk | 2:3 (1:3) | ||
| 1st(1st leg): 09/08/2006 17:30 | 2nd (2nd leg): 23/08/2006 19:30 | Winner: Shakhtar Donetsk | ||||
| 1st(1st leg) | Levski Sofia | - | Chievo Verona | 2:0 (1:0) | ||
| 2nd (2nd leg) | Chievo Verona | - | Levski Sofia | 2:2 (0:1) | ||
| 1st(1st leg): 09/08/2006 18:30 | 2nd (2nd leg): 23/08/2006 20:00 | Winner: Levski Sofia | ||||
| 1st(1st leg) | Galatasaray | - | FK Mladá Boleslav | 5:2 (2:0) | ||
| 2nd (2nd leg) | FK Mladá Boleslav | - | Galatasaray | 1:1 (0:0) | ||
| 1st(1st leg): 09/08/2006 18:30 | 2nd (2nd leg): 23/08/2006 18:30 | Winner: Galatasaray | ||||
| 1st(1st leg) | Slovan Liberec | - | Spartak Moskva | 0:0 (0:0) | ||
| 2nd (2nd leg) | Spartak Moskva | - | Slovan Liberec | 2:1 (1:0) | ||
| 1st(1st leg): 09/08/2006 19:15 | 2nd (2nd leg): 23/08/2006 16:00 | Winner: Spartak Moskva | ||||
| 1st(1st leg) | Standard Liège | - | FC Steaua Bucureşti | 2:2 (1:1) | ||
| 2nd (2nd leg) | FC Steaua Bucureşti | - | Standard Liège | 2:1 (1:1) | ||
| 1st(1st leg): 09/08/2006 19:30 | 2nd (2nd leg): 23/08/2006 18:30 | Winner: FC Steaua Bucureşti | ||||
| 1st(1st leg) | FC København | - | AFC Ajax | 1:2 (0:1) | ||
| 2nd (2nd leg) | AFC Ajax | - | FC København | 0:2 (0:0) | ||
| 1st(1st leg): 09/08/2006 19:30 | 2nd (2nd leg): 23/08/2006 19:30 | Winner: FC København | ||||
| 1st(1st leg) | Hamburger SV | - | CA Osasuna | 0:0 (0:0) | ||
| 2nd (2nd leg) | CA Osasuna | - | Hamburger SV | 1:1 (1:0) | ||
| 1st(1st leg): 09/08/2006 19:30 | 2nd (2nd leg): 22/08/2006 19:45 | Winner: Hamburger SV | ||||
| 1st(1st leg) | RB Salzburg | - | Valencia CF | 1:0 (0:0) | ||
| 2nd (2nd leg) | Valencia CF | - | RB Salzburg | 3:0 (2:0) | ||
| 1st(1st leg): 09/08/2006 19:45 | 2nd (2nd leg): 22/08/2006 21:00 | Winner: Valencia CF | ||||
| 1st(1st leg) | Heart of Midlothian | - | AEK Athen | 1:2 (0:0) | ||
| 2nd (2nd leg) | AEK Athen | - | Heart of Midlothian | 3:0 (0:0) | ||
| 1st(1st leg): 09/08/2006 19:45 | 2nd (2nd leg): 23/08/2006 19:45 | Winner: AEK Athen | ||||
| 1st(1st leg) | AC Milan | - | Crvena Zvezda | 1:0 (1:0) | ||
| 2nd (2nd leg) | Crvena Zvezda | - | AC Milan | 1:2 (0:1) | ||
| 1st(1st leg): 09/08/2006 19:45 | 2nd (2nd leg): 22/08/2006 20:00 | Winner: AC Milan | ||||
| 1st(1st leg) | Liverpool FC | - | Maccabi Haifa | 2:1 (1:1) | ||
| 2nd (2nd leg) | Maccabi Haifa | - | Liverpool FC | 1:1 (0:0) | ||
| 1st(1st leg): 09/08/2006 20:05 | 2nd (2nd leg): 22/08/2006 19:35 | Winner: Liverpool FC | ||||
