1st(1st leg) FK Mladá Boleslav - 1. FC Slovácko 1:0 (1:0)
2nd (2nd leg) 1. FC Slovácko - FK Mladá Boleslav 0:2
1st(1st leg): 04/10/2013 14:30 2nd (2nd leg): 11/10/2013 16:00 Winner: FK Mladá Boleslav
1st(1st leg) Viktoria Žižkov - Zbrojovka Brno 1:0
2nd (2nd leg) Zbrojovka Brno - Viktoria Žižkov 4:0
1st(1st leg): 05/10/2013 13:00 2nd (2nd leg): 30/10/2013 17:00 Winner: Zbrojovka Brno
1st(1st leg) 1. SC Znojmo - AC Sparta Praha 2:3 (1:1)
2nd (2nd leg) AC Sparta Praha - 1. SC Znojmo 2:1
1st(1st leg): 05/10/2013 14:30 2nd (2nd leg): 05/11/2013 17:00 Winner: AC Sparta Praha
1st(1st leg) FK Baumit Jablonec - FK Ústí nad Labem 1:0 (1:0)
2nd (2nd leg) FK Ústí nad Labem - FK Baumit Jablonec 0:2
1st(1st leg): 05/10/2013 15:00 2nd (2nd leg): 29/10/2013 13:30 Winner: FK Baumit Jablonec
1st(1st leg) FK Varnsdorf - Slavia Praha 0:0 (0:0)
2nd (2nd leg) Slavia Praha - FK Varnsdorf 1:0
1st(1st leg): 05/10/2013 15:00 2nd (2nd leg): 29/10/2013 17:00 Winner: Slavia Praha
1st(1st leg) FK Dukla Praha - 1. FK Příbram 4:0 (2:0)
2nd (2nd leg) 1. FK Příbram - FK Dukla Praha 1:2
1st(1st leg): 05/10/2013 15:00 2nd (2nd leg): 29/10/2013 16:00 Winner: FK Dukla Praha
1st(1st leg) Sigma Olomouc - Vysočina Jihlava 0:4 (0:2)
2nd (2nd leg) Vysočina Jihlava - Sigma Olomouc 0:0
1st(1st leg): 05/10/2013 16:00 2nd (2nd leg): 30/10/2013 16:00 Winner: Vysočina Jihlava
1st(1st leg) TJ Jiskra Domažlice - Viktoria Plzeň 0:3
2nd (2nd leg) Viktoria Plzeň - TJ Jiskra Domažlice 4:0 (0:0)
1st(1st leg): 16/11/2013 10:00 2nd (2nd leg): 26/03/2014 15:00 Winner: Viktoria Plzeň