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| 23/09/2020 | 06:00 | Mitsubishi Mizushima FC | - | Matsue City FC | 1:0 (0:0, 0:0) aet | |
| 07:00 | Iwaki FC | - | ReinMeer Aomori | 0:3 (0:1) | ||
| 08:00 | FC Tokushima | - | Matsuyama University | 5:0 (2:0) | ||
| 09:00 | Vonds Ichihara | - | Tokyo Musashino City | 2:3 (0:0, 0:0) aet | ||
| 09:00 | Niigata UHW | - | Artista Asama | 3:0 (0:0) | ||
| 09:00 | Fukuoka University | - | NI of F&S | 1:4 (1:1, 1:1) aet | ||
| 10:15 | Arterivo Wakayama | - | MIO Biwako Shiga | 1:0 (1:0) | ||
| 11:00 | Fuji University | - | Sony Sendai | 3:2 (1:0) | ||
| 11:00 | Tsukuba University | - | Toin University Yokohama | 4:3 (2:2) | ||
| 11:00 | Fukui United | - | Toyama Shinjo | 2:1 (0:0, 1:1) aet | ||
| 11:00 | Honda FC | - | Tokoha University | 2:1 (2:0) | ||
| 11:00 | Nagara Club | - | Maruyasu Okazaki | 0:4 (0:3) | ||
| 11:00 | FC Tiamo Hirakata | - | Nara Club | 1:0 (1:0) | ||
| 11:00 | Kochi United | - | Takamatsu University | 2:1 (1:0) | ||
| 11:00 | MD Nagasaki | - | Verspah Oita | 0:2 (0:1) | ||
| 30/09/2020 | 08:00 | Fukuyama City FC | - | FC Baleine Shimonoseki | 1:0 (1:0) |
