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| 09/09/2006 | 08:00 | Yokohama F. Marinos | - | Kawasaki Frontale | 1:2 (0:0) | |
| 10:00 | Sanfrecce Hiroshima | - | Nagoya Grampus Eight | 0:0 (0:0) | ||
| 10:30 | FC Tokyo | - | Ventforet Kofu | 1:3 (0:3) | ||
| 11:00 | JEF United Chiba | - | Shimizu S-Pulse | 1:3 (1:1) | ||
| 11:00 | Júbilo Iwata | - | Albirex Niigata | 7:0 (3:0) | ||
| 11:00 | Gamba Osaka | - | Cerezo Osaka | 3:1 (1:1) | ||
| 11:00 | Oita Trinita | - | Avispa Fukuoka | 0:0 (0:0) | ||
| 10/09/2006 | 11:00 | Kashima Antlers | - | Kyoto Purple Sanga | 1:0 (0:0) | |
| 11:00 | Omiya Ardija | - | Urawa Red Diamonds | 0:2 (0:1) |
| » Tables | Home | Away | First round | Second round | First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Gamba Osaka | 22 | 15 | 4 | 3 | 56:29 | 27 | 49 |
| 2 |
|
Kawasaki Frontale | 22 | 14 | 5 | 3 | 55:28 | 27 | 47 |
| 3 |
|
Urawa Red Diamonds | 22 | 14 | 4 | 4 | 44:17 | 27 | 46 |
| 4 |
|
Shimizu S-Pulse | 22 | 14 | 2 | 6 | 41:25 | 16 | 44 |
| 5 |
|
Kashima Antlers | 22 | 12 | 3 | 7 | 37:33 | 4 | 39 |
| 6 |
|
Oita Trinita | 22 | 10 | 6 | 6 | 36:29 | 7 | 36 |
| 7 |
|
JEF United Chiba | 22 | 9 | 5 | 8 | 41:38 | 3 | 32 |
| 8 |
|
Júbilo Iwata | 22 | 8 | 7 | 7 | 41:31 | 10 | 31 |
| 9 |
|
Omiya Ardija | 22 | 9 | 3 | 10 | 28:36 | -8 | 30 |
| 10 |
|
Yokohama F. Marinos | 22 | 8 | 5 | 9 | 35:28 | 7 | 29 |
| 11 |
|
FC Tokyo | 22 | 8 | 3 | 11 | 37:39 | -2 | 27 |
| 12 |
|
Albirex Niigata | 22 | 8 | 3 | 11 | 27:46 | -19 | 27 |
| 13 |
|
Nagoya Grampus Eight | 22 | 6 | 7 | 9 | 32:38 | -6 | 25 |
| 14 |
|
Ventforet Kofu | 22 | 7 | 4 | 11 | 27:45 | -18 | 25 |
| 15 |
|
Sanfrecce Hiroshima | 22 | 6 | 5 | 11 | 29:40 | -11 | 23 |
| 16 |
|
Kyoto Purple Sanga | 22 | 3 | 6 | 13 | 29:53 | -24 | 15 |
| 17 |
|
Avispa Fukuoka | 22 | 1 | 10 | 11 | 21:37 | -16 | 13 |
| 18 |
|
Cerezo Osaka | 22 | 3 | 4 | 15 | 26:50 | -24 | 13 |
