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| 16/03/2013 | 12:00 | VMFD Žalgiris | - | FK Šiauliai | 1:0 | |
| 15:00 | FK Dainava Alytus | - | FK Banga Gargždai | 3:0 | ||
| 17/03/2013 | 11:00 | FK Ekranas | - | FK Kruoja Pakruojis | 6:2 | |
| 13:00 | FK Tauras Tauragė | - | FK Sūduva | 1:6 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Ekranas | 2 | 2 | 0 | 0 | 9:3 | 6 | 6 |
| 2 |
|
FK Atlantas | 2 | 2 | 0 | 0 | 3:1 | 2 | 6 |
| 3 |
|
FK Kruoja Pakruojis | 3 | 2 | 0 | 1 | 6:7 | -1 | 6 |
| 4 |
|
FK Sūduva | 3 | 1 | 1 | 1 | 6:2 | 4 | 4 |
| 5 |
|
FK Banga Gargždai | 3 | 1 | 1 | 1 | 3:4 | -1 | 4 |
| 6 |
|
VMFD Žalgiris | 2 | 1 | 0 | 1 | 2:2 | 0 | 3 |
| 7 |
|
FK Dainava Alytus | 3 | 1 | 0 | 2 | 4:5 | -1 | 3 |
| 8 |
|
FK Šiauliai | 3 | 0 | 2 | 1 | 1:2 | -1 | 2 |
| 9 |
|
FK Tauras Tauragė | 3 | 0 | 0 | 3 | 2:10 | -8 | 0 |
| Champions League Quali. | |
| Europa League Quali. |
