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| 13/04/2013 | 12:00 | FK Ekranas | - | FK Atlantas | 1:2 | |
| 16:00 | FK Dainava Alytus | - | FK Šiauliai | 1:2 | ||
| 14/04/2013 | 14:00 | FK Kruoja Pakruojis | - | VMFD Žalgiris | 0:0 | |
| 16:00 | FK Banga Gargždai | - | FK Sūduva | 1:2 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Atlantas | 6 | 5 | 0 | 1 | 13:6 | 7 | 15 |
| 2 |
|
VMFD Žalgiris | 6 | 4 | 1 | 1 | 8:2 | 6 | 13 |
| 3 |
|
FK Kruoja Pakruojis | 6 | 4 | 1 | 1 | 11:7 | 4 | 13 |
| 4 |
|
FK Sūduva | 7 | 3 | 2 | 2 | 14:6 | 8 | 11 |
| 5 |
|
FK Šiauliai | 6 | 3 | 2 | 1 | 10:6 | 4 | 11 |
| 6 |
|
FK Ekranas | 6 | 3 | 1 | 2 | 14:9 | 5 | 10 |
| 7 |
|
FK Banga Gargždai | 6 | 1 | 1 | 4 | 4:12 | -8 | 4 |
| 8 |
|
FK Dainava Alytus | 7 | 1 | 0 | 6 | 6:20 | -14 | 3 |
| 9 |
|
FK Tauras Tauragė | 6 | 0 | 0 | 6 | 4:16 | -12 | 0 |
| Champions League Quali. | |
| Europa League Quali. |
