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| 06/05/2006 | 13:00 | Rot-Weiss Essen | - | FC St. Pauli | 2:0 (2:0) | |
| 13:00 | Chemnitzer FC | - | VfB Lübeck | 1:4 (1:2) | ||
| 13:00 | FC Carl Zeiss Jena | - | Kickers Emden | 2:0 (0:0) | ||
| 13:00 | Holstein Kiel | - | Rot-Weiß Erfurt | 0:0 (0:0) | ||
| 13:00 | VfL Osnabrück | - | Werder Bremen II | 1:3 (1:2) | ||
| 13:00 | SG Wattenscheid 09 | - | Hamburger SV II | 2:4 (2:0) | ||
| 07/05/2006 | 13:00 | Bayer Leverkusen II | - | Wuppertaler SV | 2:1 (1:0) | |
| 13:00 | Hertha BSC II | - | Rot-Weiß Oberhausen | 4:0 (1:0) | ||
| 17:00 | Preußen Münster | - | Fortuna Düsseldorf | 2:0 (1:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC Carl Zeiss Jena | 33 | 22 | 5 | 6 | 56:28 | 28 | 71 |
| 2 |
|
Rot-Weiss Essen | 33 | 21 | 6 | 6 | 62:31 | 31 | 69 |
| 3 |
|
VfB Lübeck | 33 | 19 | 8 | 6 | 57:32 | 25 | 65 |
| 4 |
|
Holstein Kiel | 33 | 18 | 9 | 6 | 59:36 | 23 | 63 |
| 5 |
|
FC St. Pauli | 34 | 16 | 9 | 9 | 49:36 | 13 | 57 |
| 6 |
|
Hertha BSC II | 34 | 16 | 6 | 12 | 54:41 | 13 | 54 |
| 7 |
|
Fortuna Düsseldorf | 33 | 15 | 9 | 9 | 52:42 | 10 | 54 |
| 8 |
|
VfL Osnabrück | 33 | 13 | 6 | 14 | 52:53 | -1 | 45 |
| 9 |
|
Wuppertaler SV | 33 | 11 | 11 | 11 | 37:40 | -3 | 44 |
| 10 |
|
Kickers Emden | 33 | 12 | 7 | 14 | 45:41 | 4 | 43 |
| 11 |
|
Bayer Leverkusen II | 34 | 12 | 5 | 17 | 52:61 | -9 | 41 |
| 12 |
|
Werder Bremen II | 33 | 11 | 7 | 15 | 43:44 | -1 | 40 |
| 13 |
|
Hamburger SV II | 33 | 11 | 6 | 16 | 38:43 | -5 | 39 |
| 14 |
|
SG Wattenscheid 09 | 33 | 10 | 8 | 15 | 48:58 | -10 | 38 |
| 15 |
|
Rot-Weiß Erfurt | 33 | 10 | 8 | 15 | 34:45 | -11 | 38 |
| 16 |
|
Preußen Münster | 33 | 10 | 6 | 17 | 31:45 | -14 | 36 |
| 17 |
|
Rot-Weiß Oberhausen | 33 | 8 | 9 | 16 | 26:51 | -25 | 33 |
| 18 |
|
1. FC Köln II | 33 | 6 | 7 | 20 | 36:66 | -30 | 25 |
| 19 |
|
Chemnitzer FC | 33 | 5 | 6 | 22 | 31:69 | -38 | 21 |
