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| 28/02/2009 | 12:30 | Sachsen Leipzig | - | Hertha BSC II | 1:1 (0:1) | |
| 13:00 | VfB Lübeck | - | Hamburger SV II | 1:0 (1:0) | ||
| 13:00 | 1. FC Magdeburg | - | SV Babelsberg 03 | 1:1 (0:0) | ||
| 13:00 | Energie Cottbus II | - | Holstein Kiel | 1:2 (1:0) | ||
| 13:00 | Altona 93 | - | Hannover 96 II | 0:3 (0:2) | ||
| 01/03/2009 | 12:30 | SV Wilhelmshaven | - | Hallescher FC | 0:1 (0:1) | |
| 01/04/2009 | 15:00 | FC Oberneuland | - | Hansa Rostock II | 3:0 (1:0) | |
| 18:00 | VFC Plauen | - | VfL Wolfsburg II | 1:5 (0:2) | ||
| 22/04/2009 | 17:30 | Türkiyemspor Berlin | - | Chemnitzer FC | 0:3 (0:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Holstein Kiel | 20 | 13 | 5 | 2 | 33:16 | 17 | 44 |
| 2 |
|
Hallescher FC | 20 | 11 | 9 | 0 | 23:8 | 15 | 42 |
| 3 |
|
1. FC Magdeburg | 20 | 12 | 5 | 3 | 31:15 | 16 | 41 |
| 4 |
|
SV Babelsberg 03 | 20 | 10 | 9 | 1 | 25:9 | 16 | 39 |
| 5 |
|
Hannover 96 II | 20 | 9 | 3 | 8 | 29:24 | 5 | 30 |
| 6 |
|
SV Wilhelmshaven | 20 | 8 | 6 | 6 | 27:25 | 2 | 30 |
| 7 |
|
VfL Wolfsburg II | 20 | 8 | 5 | 7 | 30:20 | 10 | 29 |
| 8 |
|
Chemnitzer FC | 20 | 7 | 6 | 7 | 31:24 | 7 | 27 |
| 9 |
|
Hansa Rostock II | 20 | 8 | 3 | 9 | 33:33 | 0 | 27 |
| 10 |
|
FC Oberneuland | 20 | 7 | 5 | 8 | 22:21 | 1 | 26 |
| 11 |
|
VfB Lübeck | 20 | 5 | 9 | 6 | 20:20 | 0 | 24 |
| 12 |
|
VFC Plauen | 20 | 6 | 6 | 8 | 26:31 | -5 | 24 |
| 13 |
|
Altona 93 | 20 | 6 | 5 | 9 | 25:34 | -9 | 23 |
| 14 |
|
Hertha BSC II | 20 | 6 | 5 | 9 | 20:33 | -13 | 23 |
| 15 |
|
Türkiyemspor Berlin | 20 | 6 | 3 | 11 | 19:30 | -11 | 21 |
| 16 |
|
Hamburger SV II | 20 | 5 | 5 | 10 | 23:26 | -3 | 20 |
| 17 |
|
Sachsen Leipzig | 20 | 2 | 7 | 11 | 9:31 | -22 | 13 |
| 18 |
|
Energie Cottbus II | 20 | 1 | 4 | 15 | 12:38 | -26 | 7 |
| Promotion | |
| Relegation |
