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| 17/04/2009 | 18:00 | TSV 1860 München II | - | Karlsruher SC II | 3:0 (2:0) | |
| 18/04/2009 | 13:00 | SSV Reutlingen | - | Viktoria Aschaffenburg | 2:2 (2:1) | |
| 13:00 | SpVgg Greuther Fürth II | - | SV Darmstadt 98 | 3:1 (2:0) | ||
| 13:00 | SSV Ulm 1846 | - | SC Pfullendorf | 3:4 (2:1) | ||
| 13:00 | Hessen Kassel | - | SpVgg Unterhaching II | 4:0 (2:0) | ||
| 13:00 | SC Freiburg II | - | SV Wehen Wiesbaden II | 3:1 (2:0) | ||
| 13:00 | Waldhof Mannheim | - | TSV Großbardorf | 2:0 (2:0) | ||
| 19/04/2009 | 13:00 | 1. FC Eintracht Bamberg | - | 1. FC Nürnberg II | 0:2 (0:0) | |
| 13:00 | Eintracht Frankfurt II | - | 1. FC Heidenheim 1846 | 1:1 (1:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Hessen Kassel | 26 | 16 | 5 | 5 | 54:24 | 30 | 53 |
| 2 |
|
1. FC Heidenheim 1846 | 26 | 15 | 6 | 5 | 45:29 | 16 | 51 |
| 3 |
|
1. FC Nürnberg II | 26 | 14 | 7 | 5 | 54:28 | 26 | 49 |
| 4 |
|
Eintracht Frankfurt II | 26 | 13 | 7 | 6 | 41:27 | 14 | 46 |
| 5 |
|
SSV Ulm 1846 | 26 | 11 | 12 | 3 | 47:25 | 22 | 45 |
| 6 |
|
Waldhof Mannheim | 26 | 14 | 3 | 9 | 43:27 | 16 | 45 |
| 7 |
|
SV Wehen Wiesbaden II | 26 | 13 | 3 | 10 | 33:25 | 8 | 42 |
| 8 |
|
SC Pfullendorf | 26 | 12 | 5 | 9 | 40:36 | 4 | 41 |
| 9 |
|
TSV 1860 München II | 26 | 11 | 5 | 10 | 42:34 | 8 | 38 |
| 10 |
|
1. FC Eintracht Bamberg | 26 | 11 | 5 | 10 | 44:46 | -2 | 38 |
| 11 |
|
SpVgg Greuther Fürth II | 26 | 9 | 7 | 10 | 30:27 | 3 | 34 |
| 12 |
|
Viktoria Aschaffenburg | 26 | 6 | 11 | 9 | 28:34 | -6 | 29 |
| 13 |
|
SV Darmstadt 98 | 26 | 7 | 8 | 11 | 32:40 | -8 | 29 |
| 14 |
|
SSV Reutlingen | 26 | 7 | 7 | 12 | 32:48 | -16 | 28 |
| 15 |
|
SC Freiburg II | 26 | 7 | 5 | 14 | 29:49 | -20 | 26 |
| 16 |
|
Karlsruher SC II | 26 | 7 | 4 | 15 | 27:50 | -23 | 25 |
| 17 |
|
SpVgg Unterhaching II | 26 | 3 | 5 | 18 | 25:58 | -33 | 14 |
| 18 |
|
TSV Großbardorf | 26 | 3 | 5 | 18 | 24:63 | -39 | 14 |
| Promotion | |
| Relegation |
