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| 02/05/2009 | 08:30 | FK Tom Tomsk | - | Terek Grozny | 2:1 (1:1) | |
| 11:00 | Spartak Moskva | - | Dinamo Moskva | 0:2 (0:1) | ||
| 13:30 | FK Amkar Perm | - | FK Moskva | 0:1 (0:1) | ||
| 16:00 | FK Saturn | - | Rubin Kazan | 0:5 (0:2) | ||
| 03/05/2009 | 10:00 | Krylia Sovetov | - | CSKA Moskva | 1:3 (1:0) | |
| 12:15 | FK Rostov | - | Zenit St. Petersburg | 2:1 (0:0) | ||
| 15:30 | Lokomotiv Moskva | - | Spartak Nalchik | 1:0 (0:0) | ||
| 16:45 | FK Khimki | - | Kuban Krasnodar (1928-2018) | 2:2 (1:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Rubin Kazan | 7 | 4 | 2 | 1 | 13:3 | 10 | 14 |
| 2 |
|
FK Moskva | 7 | 4 | 2 | 1 | 7:3 | 4 | 14 |
| 3 |
|
CSKA Moskva | 7 | 4 | 1 | 2 | 14:5 | 9 | 13 |
| 4 |
|
Krylia Sovetov | 7 | 4 | 1 | 2 | 8:5 | 3 | 13 |
| 5 |
|
Zenit St. Petersburg | 7 | 3 | 3 | 1 | 12:7 | 5 | 12 |
| 6 |
|
FK Rostov | 7 | 3 | 3 | 1 | 6:4 | 2 | 12 |
| 7 |
|
Dinamo Moskva | 7 | 4 | 0 | 3 | 7:7 | 0 | 12 |
| 8 |
|
Spartak Moskva | 7 | 3 | 1 | 3 | 8:7 | 1 | 10 |
| 9 |
|
FK Tom Tomsk | 7 | 3 | 1 | 3 | 5:7 | -2 | 10 |
| 10 |
|
Lokomotiv Moskva | 7 | 2 | 3 | 2 | 7:9 | -2 | 9 |
| 11 |
|
Kuban Krasnodar (1928-2018) | 7 | 2 | 2 | 3 | 5:8 | -3 | 8 |
| 12 |
|
Terek Grozny | 7 | 2 | 2 | 3 | 5:7 | -2 | 8 |
| 13 |
|
FK Amkar Perm | 7 | 1 | 3 | 3 | 2:6 | -4 | 6 |
| 14 |
|
Spartak Nalchik | 7 | 1 | 2 | 4 | 5:7 | -2 | 5 |
| 15 |
|
FK Saturn | 7 | 1 | 2 | 4 | 5:14 | -9 | 5 |
| 16 |
|
FK Khimki | 7 | 0 | 2 | 5 | 7:17 | -10 | 2 |
| Champions League | |
| Champions League Quali. | |
| Europa League | |
| Relegation |
