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| 18/10/2016 | 14:00 | 1. FC Tatran Prešov | - | FK Poprad | 0:3 (0:1) | |
| 16:30 | MFK Ružomberok | - | AS Trenčín | 3:5 (0:0, 0:0) pso | ||
| 19/10/2016 | 14:00 | ŠKF Sereď | - | MŠK Žilina | 3:5 (0:0, 1:1) pso | |
| 14:00 | MFK Skalica | - | Spartak Myjava | 1:0 (0:0) | ||
| 14:00 | Tatran Liptovský Mikuláš | - | ŠKM Liptovský Hrádok | 2:4 (0:0, 1:1) pso | ||
| 14:00 | Veľké Ludince | - | Slovan Bratislava | 0:1 (0:1) | ||
| 22/11/2016 | 14:30 | MFK Zemplín Michalovce | - | FC Nitra | 3:2 (1:2) | |
| 30/11/2016 | 18:00 | FC DAC 1904 | - | Spartak Trnava | 1:0 (0:0) |
