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| 1st(1st leg) | Mika FC | - | FC Tiraspol | 2:2 (2:0) | ||
| 2nd (2nd leg) | FC Tiraspol | - | Mika FC | 0:0 (0:0) | ||
| 1st(1st leg): 21/06/2008 15:00 | 2nd (2nd leg): 28/06/2008 16:00 | Winner: FC Tiraspol | ||||
| 1st(1st leg) | Lisburn Distillery | - | TPS Turku | 2:3 (1:0) | ||
| 2nd (2nd leg) | TPS Turku | - | Lisburn Distillery | 3:1 (1:0) | ||
| 1st(1st leg): 21/06/2008 15:00 | 2nd (2nd leg): 29/06/2008 16:30 | Winner: TPS Turku | ||||
| 1st(1st leg) | Etzella Ettelbruck | - | Lokomotiv Tbilisi | 0:0 (0:0) | ||
| 2nd (2nd leg) | Lokomotiv Tbilisi | - | Etzella Ettelbruck | 2:2 (2:1) | ||
| 1st(1st leg): 21/06/2008 16:00 | 2nd (2nd leg): 28/06/2008 16:00 | Winner: Etzella Ettelbruck | ||||
| 1st(1st leg) | FK Rīga | - | Fylkir Reykjavík | 1:2 (0:1) | ||
| 2nd (2nd leg) | Fylkir Reykjavík | - | FK Rīga | 0:2 (0:1) | ||
| 1st(1st leg): 21/06/2008 16:00 | 2nd (2nd leg): 29/06/2008 17:00 | Winner: FK Rīga | ||||
| 1st(1st leg) | Hibernians FC | - | ND Gorica | 0:3 (0:1) | ||
| 2nd (2nd leg) | ND Gorica | - | Hibernians FC | 0:0 (0:0) | ||
| 1st(1st leg): 21/06/2008 17:00 | 2nd (2nd leg): 28/06/2008 19:00 | Winner: ND Gorica | ||||
| 1st(1st leg) | Neftçi PFK | - | FC Nitra | 2:0 (2:0) | ||
| 2nd (2nd leg) | FC Nitra | - | Neftçi PFK | 3:1 (1:0) | ||
| 1st(1st leg): 21/06/2008 17:00 | 2nd (2nd leg): 28/06/2008 16:00 | Winner: Neftçi PFK | ||||
| 1st(1st leg) | KS Cracovia | - | Shakhter Soligorsk | 1:2 (1:0) | ||
| 2nd (2nd leg) | Shakhter Soligorsk | - | KS Cracovia | 3:0 (0:0) | ||
| 1st(1st leg): 21/06/2008 17:00 | 2nd (2nd leg): 29/06/2008 15:00 | Winner: Shakhter Soligorsk | ||||
| 1st(1st leg) | HNK Rijeka | - | FK Renova | 0:0 (0:0) | ||
| 2nd (2nd leg) | FK Renova | - | HNK Rijeka | 2:0 (1:0) | ||
| 1st(1st leg): 21/06/2008 17:30 | 2nd (2nd leg): 28/06/2008 16:00 | Winner: FK Renova | ||||
| 1st(1st leg) | Čelik Zenica | - | FK Grbalj Radanovići | 3:2 (1:1) | ||
| 2nd (2nd leg) | FK Grbalj Radanovići | - | Čelik Zenica | 2:1 (0:1) | ||
| 1st(1st leg): 21/06/2008 18:00 | 2nd (2nd leg): 28/06/2008 16:30 | Winner: FK Grbalj Radanovići | ||||
| 1st(1st leg) | Bohemian FC | - | Rhyl FC | 5:1 (0:1) | ||
| 2nd (2nd leg) | Rhyl FC | - | Bohemian FC | 2:4 (2:4) | ||
| 1st(1st leg): 21/06/2008 19:00 | 2nd (2nd leg): 28/06/2008 14:30 | Winner: Bohemian FC | ||||
| 1st(1st leg) | KS Besa | - | Ethnikos Achna | 0:0 (0:0) | ||
| 2nd (2nd leg) | Ethnikos Achna | - | KS Besa | 1:1 (0:0) | ||
| 1st(1st leg): 21/06/2008 19:30 | 2nd (2nd leg): 28/06/2008 16:00 | Winner: KS Besa | ||||
| 1st(1st leg) | Zhetysu Taldykorgan | - | Budapest Honvéd | 1:2 (0:0) | ||
| 2nd (2nd leg) | Budapest Honvéd | - | Zhetysu Taldykorgan | 4:2 (2:0) | ||
| 1st(1st leg): 22/06/2008 13:30 | 2nd (2nd leg): 28/06/2008 18:00 | Winner: Budapest Honvéd | ||||
| 1st(1st leg) | FK Ekranas | - | JK Narva Trans | 1:0 (0:0) | ||
| 2nd (2nd leg) | JK Narva Trans | - | FK Ekranas | 0:3 (0:2) | ||
| 1st(1st leg): 22/06/2008 15:00 | 2nd (2nd leg): 28/06/2008 15:00 | Winner: FK Ekranas | ||||
| 1st(1st leg) | HB Tórshavn | - | IF Elfsborg | 1:4 (1:2) | ||
| 2nd (2nd leg) | IF Elfsborg | - | HB Tórshavn | 0:0 (0:0) | ||
| 1st(1st leg): 22/06/2008 15:00 | 2nd (2nd leg): 29/06/2008 14:30 | Winner: IF Elfsborg | ||||
