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| 1st(1st leg) | Djibouti | - | Congo DR | 1:1 (1:0) | ||
| 2nd (2nd leg) | Congo DR | - | Djibouti | 9:1 (4:1) | ||
| 1st(1st leg): 07/04/2000 15:00 | 2nd (2nd leg): 23/04/2000 14:30 | Winner: Congo DR | ||||
| 1st(1st leg) | Mauritania | - | Tunisia | 1:2 (0:0) | ||
| 2nd (2nd leg) | Tunisia | - | Mauritania | 3:0 (2:0) | ||
| 1st(1st leg): 07/04/2000 16:00 | 2nd (2nd leg): 22/04/2000 16:00 | Winner: Tunisia | ||||
| 1st(1st leg) | Madagascar | - | Gabon | 2:0 (1:0) | ||
| 2nd (2nd leg) | Gabon | - | Madagascar | 1:0 (1:0) | ||
| 1st(1st leg): 08/04/2000 13:30 | 2nd (2nd leg): 22/04/2000 15:00 | Winner: Madagascar | ||||
| 1st(1st leg) | Botswana | - | Zambia | 0:1 (0:1) | ||
| 2nd (2nd leg) | Zambia | - | Botswana | 1:0 (0:0) | ||
| 1st(1st leg): 08/04/2000 14:00 | 2nd (2nd leg): 22/04/2000 14:00 | Winner: Zambia | ||||
| 1st(1st leg) | Malawi | - | Kenya | 2:0 (0:0) | ||
| 2nd (2nd leg) | Kenya | - | Malawi | 0:0 (0:0) | ||
| 1st(1st leg): 08/04/2000 14:00 | 2nd (2nd leg): 22/04/2000 15:00 | Winner: Malawi | ||||
| 1st(1st leg) | São Tomé and Príncipe | - | Sierra Leone | 2:0 (1:0) | ||
| 2nd (2nd leg) | Sierra Leone | - | São Tomé and Príncipe | 4:0 (2:0) | ||
| 1st(1st leg): 08/04/2000 15:00 | 2nd (2nd leg): 22/04/2000 15:30 | Winner: Sierra Leone | ||||
| 1st(1st leg) | Tanzania | - | Ghana | 0:1 (0:1) | ||
| 2nd (2nd leg) | Ghana | - | Tanzania | 3:2 (2:1) | ||
| 1st(1st leg): 08/04/2000 15:00 | 2nd (2nd leg): 23/04/2000 15:00 | Winner: Ghana | ||||
| 1st(1st leg) | Guinea-Bissau | - | Togo | 0:0 (0:0) | ||
| 2nd (2nd leg) | Togo | - | Guinea-Bissau | 3:0 (1:0) | ||
| 1st(1st leg): 08/04/2000 15:30 | 2nd (2nd leg): 23/04/2000 14:30 | Winner: Togo | ||||
| 1st(1st leg) | Seychelles | - | Namibia | 1:1 (1:1) | ||
| 2nd (2nd leg) | Namibia | - | Seychelles | 3:0 (2:0) | ||
| 1st(1st leg): 08/04/2000 15:30 | 2nd (2nd leg): 22/04/2000 14:00 | Winner: Namibia | ||||
| 1st(1st leg) | Uganda | - | Guinea | 4:4 (0:1) | ||
| 2nd (2nd leg) | Guinea | - | Uganda | 3:0 (0:0) | ||
| 1st(1st leg): 08/04/2000 15:30 | 2nd (2nd leg): 23/04/2000 15:30 | Winner: Guinea | ||||
| 1st(1st leg) | Cape Verde | - | Algeria | 0:0 (0:0) | ||
| 2nd (2nd leg) | Algeria | - | Cape Verde | 2:0 (2:0) | ||
| 1st(1st leg): 09/04/2000 14:00 | 2nd (2nd leg): 21/04/2000 15:00 | Winner: Algeria | ||||
| 1st(1st leg) | Lesotho | - | South Africa | 0:2 (0:1) | ||
| 2nd (2nd leg) | South Africa | - | Lesotho | 1:0 (0:0) | ||
| 1st(1st leg): 09/04/2000 14:00 | 2nd (2nd leg): 22/04/2000 14:00 | Winner: South Africa | ||||
| 1st(1st leg) | Eswatini | - | Angola | 0:1 (0:0) | ||
| 2nd (2nd leg) | Angola | - | Eswatini | 7:1 (4:0) | ||
| 1st(1st leg): 09/04/2000 14:00 | 2nd (2nd leg): 23/04/2000 15:00 | Winner: Angola | ||||
| 1st(1st leg) | Central Afr. Republic | - | Zimbabwe | 0:1 (0:1) | ||
| 2nd (2nd leg) | Zimbabwe | - | Central Afr. Republic | 3:1 (2:1) | ||
| 1st(1st leg): 09/04/2000 14:00 | 2nd (2nd leg): 23/04/2000 14:00 | Winner: Zimbabwe | ||||
| 1st(1st leg) | Rwanda | - | Ivory Coast | 2:2 (0:1) | ||
| 2nd (2nd leg) | Ivory Coast | - | Rwanda | 2:0 (1:0) | ||
| 1st(1st leg): 09/04/2000 14:30 | 2nd (2nd leg): 23/04/2000 15:00 | Winner: Ivory Coast | ||||
| 1st(1st leg) | Benin | - | Senegal | 1:1 (1:1) | ||
| 2nd (2nd leg) | Senegal | - | Benin | 1:0 (0:0) | ||
| 1st(1st leg): 09/04/2000 15:00 | 2nd (2nd leg): 23/04/2000 15:30 | Winner: Senegal | ||||
| 1st(1st leg) | Equatorial Guinea | - | Congo | 1:3 (1:2) | ||
| 2nd (2nd leg) | Congo | - | Equatorial Guinea | 2:1 (1:0) | ||
| 1st(1st leg): 09/04/2000 15:00 | 2nd (2nd leg): 23/04/2000 14:30 | Winner: Congo | ||||
| 1st(1st leg) | Eritrea | - | Nigeria | 0:0 (0:0) | ||
| 2nd (2nd leg) | Nigeria | - | Eritrea | 4:0 (2:0) | ||
| 1st(1st leg): 09/04/2000 15:00 | 2nd (2nd leg): 22/04/2000 15:00 | Winner: Nigeria | ||||
| 1st(1st leg) | Ethiopia | - | Burkina Faso | 2:1 (0:0) | ||
| 2nd (2nd leg) | Burkina Faso | - | Ethiopia | 3:0 (3:0) | ||
| 1st(1st leg): 09/04/2000 15:00 | 2nd (2nd leg): 23/04/2000 15:00 | Winner: Burkina Faso | ||||
| 1st(1st leg) | Gambia | - | Morocco | 0:1 (0:0) | ||
| 2nd (2nd leg) | Morocco | - | Gambia | 2:0 (2:0) | ||
| 1st(1st leg): 09/04/2000 16:00 | 2nd (2nd leg): 22/04/2000 18:30 | Winner: Morocco | ||||
| 1st(1st leg) | Libya | - | Mali | 3:0 (1:0) | ||
| 2nd (2nd leg) | Mali | - | Libya | 3:1 (0:1) | ||
| 1st(1st leg): 09/04/2000 17:00 | 2nd (2nd leg): 23/04/2000 16:30 | Winner: Libya | ||||
| 1st(1st leg) | Chad | - | Liberia | 0:1 (0:1) | ||
| 2nd (2nd leg) | Liberia | - | Chad | 0:0 (0:0) | ||
| 1st(1st leg): 09/04/2000 18:30 | 2nd (2nd leg): 23/04/2000 15:00 | Winner: Liberia | ||||
| 1st(1st leg) | Sudan | - | Mozambique | 1:0 (1:0) | ||
| 2nd (2nd leg) | Mozambique | - | Sudan | 2:1 (1:0) | ||
| 1st(1st leg): 09/04/2000 19:00 | 2nd (2nd leg): 23/04/2000 14:00 | Winner: Sudan | ||||
