| Champions League | M. | W | D | L | goals | |||
| at home | 1 | 0 | 0 | 1 | 1 | : | 2 | |
| Away | 1 | 0 | 1 | 0 | 1 | : | 1 | |
| ∑ | 2 | 0 | 1 | 1 | 2 | : | 3 | |
| Europa League | M. | W | D | L | goals | |||
| at home | 1 | 1 | 0 | 0 | 2 | : | 0 | |
| Away | 1 | 0 | 0 | 1 | 2 | : | 3 | |
| ∑ | 2 | 1 | 0 | 1 | 4 | : | 3 | |
| overall | M. | W | D | L | goals | |||
| at home | 2 | 1 | 0 | 1 | 3 | : | 2 | |
| Away | 2 | 0 | 1 | 1 | 3 | : | 4 | |
| Neutral Place | 0 | 0 | 0 | 0 | 0 | : | 0 | |
| ∑ | 4 | 1 | 1 | 2 | 6 | : | 6 | |
| Champions League | |||||
| 2008/2009 | Round of 16 | Panathinaikos | - | Villarreal CF | 1:2 (0:0) |
| 2008/2009 | Round of 16 | Villarreal CF | - | Panathinaikos | 1:1 (0:0) |
| Europa League | |||||
| 2023/2024 | Group F | Villarreal CF | - | Panathinaikos | 3:2 (2:0) |
| 2023/2024 | Group F | Panathinaikos | - | Villarreal CF | 2:0 (1:0) |
|
For games that were decided on penalties the score after 120 minutes will be included in the ranking |
Greece 
![Panathinaikos [Women]](https://s.hs-data.com/bilder/wappen/mini/48626.gif?fallback=png "Panathinaikos [Women]"){kind=small}
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