| 3. Round | 03/08/2012 | Lokomotiva Zagreb | - | NK Osijek | 0:0 | ||||
| 4. Round | 11/08/2012 | HNK Rijeka | - | Lokomotiva Zagreb | 2:2 |  |
|||
| 9. Round | 21/09/2012 | Lokomotiva Zagreb | - | NK Istra 1961 | 1:0 | ||||
| 10. Round | 30/09/2012 | RNK Split | - | Lokomotiva Zagreb | 1:1 |  |
|
||
| 11. Round | 05/10/2012 | Lokomotiva Zagreb | - | NK Zadar | 2:1 | ||||
| 12. Round | 19/10/2012 | Lokomotiva Zagreb | - | NK Zagreb | 1:1 | ||||
| 13. Round | 26/10/2012 | Lokomotiva Zagreb | - | NK Inter Zaprešić | 2:3 | |
|||
| 15. Round | 11/11/2012 | Lokomotiva Zagreb | - | HNK Rijeka | 2:1 | |
|||
| 17. Round | 23/11/2012 | Lokomotiva Zagreb | - | Slaven Belupo | 3:1 | ||||
| 19. Round | 07/12/2012 | Lokomotiva Zagreb | - | HNK Cibalia | 1:0 | ||||
| 20. Round | 16/02/2013 | NK Istra 1961 | - | Lokomotiva Zagreb | 2:2 | ||||
| 21. Round | 22/02/2013 | Lokomotiva Zagreb | - | RNK Split | 3:2 | ||||
| 22. Round | 02/03/2013 | NK Zadar | - | Lokomotiva Zagreb | 1:0 | |
|||
| 23. Round | 08/03/2013 | Lokomotiva Zagreb | - | NK Zadar | 4:1 | ||||
| 24. Round | 15/03/2013 | NK Zagreb | - | Lokomotiva Zagreb | 2:4 | |
|||
| 25. Round | 28/03/2013 | Lokomotiva Zagreb | - | NK Inter Zaprešić | 2:2 | |
|||
| 27. Round | 13/04/2013 | Lokomotiva Zagreb | - | Slaven Belupo | 5:1 |
Croatia