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| 1st(1st leg) | Deportivo Zacapa | - | CSD Municipal | 0:1 | ||
| 2nd (2nd leg) | CSD Municipal | - | Deportivo Zacapa | 2:0 | ||
| 1st(1st leg): 29/11/2006 | 2nd (2nd leg): 03/12/2006 | Winner: CSD Municipal | ||||
| 1st(1st leg) | Deportivo Marquense | - | Deportivo Jalapa | 3:2 | ||
| 2nd (2nd leg) | Deportivo Jalapa | - | Deportivo Marquense | 2:0 | ||
| 1st(1st leg): 30/11/2006 | 2nd (2nd leg): 03/12/2006 | Winner: Deportivo Jalapa | ||||
