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| 31/05/2013 | 19:45 | Tolka Rovers | - | College Corinthians | 2:2 (1:2) | |
| 19:45 | Bray Wanderers | - | Mervue United | 2:0 | ||
| 19:45 | Bohemian FC | - | Drogheda United | 0:3 | ||
| 19:45 | Salthill Devon | - | Shamrock Rovers | 0:2 | ||
| 19:45 | Phoenix FC | - | Dundalk FC | 0:4 (0:3) | ||
| 20:00 | Finn Harps | - | Wexford Youths | 2:1 | ||
| 20:00 | Shelbourne FC | - | Bandon AFC | 3:0 (1:0) | ||
| 01/06/2013 | 14:30 | St. Patrick's CYFC | - | Cobh Ramblers | 3:4 | |
| 15:00 | Glenville FC | - | Limerick FC | 0:3 | ||
| 15:00 | Blarney United | - | Derry City | 0:4 | ||
| 17:00 | St Patrick's Athletic | - | UC Dublin | 4:0 | ||
| 19:00 | Bluebell United | - | Athlone Town | 2:2 | ||
| 19:00 | Waterford United | - | Sligo Rovers | 0:2 | ||
| 19:30 | Longford Town | - | Pike Rovers | 4:0 | ||
| 09/06/2013 | 14:00 | Avondale United | - | Sheriff YC | 1:2 | |
| 05/08/2013 | 17:00 | Cork City | - | Kilbarrack United | 3:1 (1:0) | |
| decisive matches | ||||||
|---|---|---|---|---|---|---|
| 04/06/2013 | 19:45 | Athlone Town | - | Bluebell United | 2:3 aet | |
| 08/06/2013 | 15:00 | College Corinthians | - | Tolka Rovers | 3:0 aet | |
