1. Round | 15/03/2009 | FK Tom Tomsk | - | Krylia Sovetov | 0:1 | ||||
3. Round | 05/04/2009 | FK Tom Tomsk | - | Zenit St. Petersburg | 0:3 | ||||
7. Round | 02/05/2009 | FK Tom Tomsk | - | Terek Grozny | 2:1 | ||||
8. Round | 11/05/2009 | Rubin Kazan | - | FK Tom Tomsk | 4:0 | ||||
12. Round | 14/06/2009 | FK Tom Tomsk | - | FK Amkar Perm | 1:2 |