1. Round | 07/08/2016 | FK Pobeda Junior | - | FK Pelister | 0:2 | ||||
2. Round | 14/08/2016 | FK Pelister | - | FK Bregalnica Štip | 3:0 | ||||
25. Round | 05/04/2017 | FK Pelister | - | Sileks Kratovo | 0:0 | ||||
26. Round | 09/04/2017 | Vardar Skopje | - | FK Pelister | 3:1 | ||||
28. Round | 23/04/2017 | FK Pelister | - | FK Pobeda Junior | 1:0 | ||||
29. Round | 26/04/2017 | FK Bregalnica Štip | - | FK Pelister | 1:1 | ||||
30. Round | 30/04/2017 | FK Pelister | - | Makedonija GP | 3:1 | ||||
31. Round | 03/05/2017 | FK Rabotnički | - | FK Pelister | 1:1 | ||||
32. Round | 07/05/2017 | FK Pelister | - | FK Renova | 3:0 | ||||
33. Round | 13/05/2017 | FK Pelister | - | KF Shkupi | 1:0 | ||||
34. Round | 21/05/2017 | Sileks Kratovo | - | FK Pelister | 3:3 | ||||
36. Round | 31/05/2017 | KF Shkëndija 79 | - | FK Pelister | 3:1 |