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| 20/10/2012 | FK Šiauliai | - | REO Vilnius | 3:0 dec. | ||
| 11:00 | FK Kruoja Pakruojis | - | FK Atlantas | 5:0 | ||
| 13:00 | FK Tauras Tauragė | - | VMFD Žalgiris | 0:4 | ||
| 21/10/2012 | 14:10 | FK Sūduva | - | FK Banga Gargždai | 3:0 | |
| 17:00 | FK Ekranas | - | FK Dainava Alytus | 3:0 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Ekranas | 33 | 24 | 7 | 2 | 73:23 | 50 | 79 |
| 2 |
|
VMFD Žalgiris | 33 | 24 | 6 | 3 | 70:20 | 50 | 78 |
| 3 |
|
FK Sūduva | 33 | 19 | 6 | 8 | 68:35 | 33 | 63 |
| 4 |
|
FK Kruoja Pakruojis | 33 | 19 | 4 | 10 | 52:28 | 24 | 61 |
| 5 |
|
FK Šiauliai | 33 | 17 | 3 | 13 | 74:48 | 26 | 54 |
| 6 |
|
FK Banga Gargždai | 33 | 11 | 8 | 14 | 38:37 | 1 | 41 |
| 7 |
|
FK Dainava Alytus | 33 | 8 | 4 | 21 | 36:66 | -30 | 28 |
| 8 |
|
FK Atlantas | 33 | 6 | 6 | 21 | 26:80 | -54 | 24 |
| 9 |
|
FK Tauras Tauragė | 33 | 7 | 2 | 24 | 33:87 | -54 | 23 |
| 10 |
|
REO Vilnius | 33 | 5 | 4 | 24 | 26:72 | -46 | 19 |
| Champions League Quali. | |
| Europa League Quali. | |
| Relegation |
