1. Round | 05/08/2006 | Grimsby Town | - | Boston United | 3:2 | ||||
2. Round | 09/08/2006 | Boston United | - | Peterborough United | 0:1 | ||||
3. Round | 12/08/2006 | Boston United | - | Darlington FC | 4:1 | ||||
4. Round | 19/08/2006 | Shrewsbury Town | - | Boston United | 5:0 | ||||
5. Round | 26/08/2006 | Boston United | - | Milton Keynes Dons | 0:1 | ||||
6. Round | 01/09/2006 | Hartlepool United | - | Boston United | 2:1 | ||||
7. Round | 09/09/2006 | Boston United | - | Stockport County | 2:1 | ||||
20. Round | 05/12/2006 | Chester City | - | Boston United | 3:1 | ||||
21. Round | 09/12/2006 | Boston United | - | Wrexham FC | 4:0 | ||||
23. Round | 23/12/2006 | Boston United | - | Walsall FC | 1:1 | ||||
24. Round | 26/12/2006 | Lincoln City | - | Boston United | 2:1 | ||||
25. Round | 30/12/2006 | Rochdale AFC | - | Boston United | 4:0 | ||||
26. Round | 01/01/2007 | Boston United | - | Barnet FC | 2:1 | ||||
27. Round | 06/01/2007 | Boston United | - | Accrington Stanley | 1:0 | ||||
28. Round | 13/01/2007 | Stockport County | - | Boston United | 2:0 | ||||
29. Round | 20/01/2007 | Boston United | - | Swindon Town | 1:3 |