1. Round | 05/08/2006 | Grimsby Town | - | Boston United | 3:2 | ||||
2. Round | 09/08/2006 | Boston United | - | Peterborough United | 0:1 | ||||
3. Round | 12/08/2006 | Boston United | - | Darlington FC | 4:1 | ||||
4. Round | 19/08/2006 | Shrewsbury Town | - | Boston United | 5:0 | ||||
5. Round | 26/08/2006 | Boston United | - | Milton Keynes Dons | 0:1 | ||||
6. Round | 01/09/2006 | Hartlepool United | - | Boston United | 2:1 | ||||
7. Round | 09/09/2006 | Boston United | - | Stockport County | 2:1 | ||||
8. Round | 12/09/2006 | Barnet FC | - | Boston United | 3:3 | ||||
9. Round | 16/09/2006 | Accrington Stanley | - | Boston United | 2:1 | ||||
10. Round | 23/09/2006 | Boston United | - | Rochdale AFC | 0:3 | ||||
12. Round | 30/09/2006 | Swindon Town | - | Boston United | 1:1 | ||||
13. Round | 07/10/2006 | Bristol Rovers | - | Boston United | 1:0 | ||||
14. Round | 14/10/2006 | Boston United | - | Mansfield Town | 1:1 | ||||
15. Round | 21/10/2006 | Bury FC | - | Boston United | 2:1 |