| Premier Liga | Matches | W | D | L |  |
 |
 |
| home | 2 | - | - | 2 | 2 | 1 | - |
| away | 1 | - | - | 1 | 2 | - | - |
| overall | 3 | - | - | 3 | 4 | 1 | - |
| 1. Division | Matches | W | D | L | |
|
|
| home | 1 | - | - | 1 | 2 | - | - |
| away | 5 | 1 | - | 4 | 13 | - | 1 |
| overall | 6 | 1 | - | 5 | 15 | - | 1 |
| Premier Liga | Home | - | Guest | |
|
|
Results |
| 16/10/16 | FK Orenburg | - | FK Tom Tomsk | 2 | - | - | 3:1 |
| 01/12/16 | FK Tom Tomsk | - | Lokomotiv Moskva | 1 | 1 | - | 1:6 |
| 01/05/17 | FK Tom Tomsk | - | Zenit St. Petersburg | 1 | - | - | 0:2 |
| 1. Division | Home | - | Guest | |
|
|
Results |
| 18/04/16 | SKA-Khabarovsk | - | FK Tom Tomsk | 1 | - | - | 1:0 |
| 02/09/17 | Sibir Novosibirsk | - | FK Tom Tomsk | 3 | - | - | 1:0 |
| 08/08/20 | FK Chertanovo | - | FK Tom Tomsk | 3 | - | 1 | 2:0 |
| 13/10/20 | FK Krasnodar 2 | - | FK Tom Tomsk | 2 | - | - | 2:0 |
| 07/11/20 | FK Tom Tomsk | - | FK Orenburg | 2 | - | - | 0:1 |
| 07/03/22 | Rotor Volgograd | - | FK Tom Tomsk | 4 | - | - | 1:5 |
Russia