| Premier Liga | Matches | W | D | L |  |
 |
 |
| home | 6 | 4 | 1 | 1 | 15 | - | 1 |
| away | 2 | - | 2 | - | 9 | - | - |
| overall | 8 | 4 | 3 | 1 | 24 | - | 1 |
| 1. Division | Matches | W | D | L | |
|
|
| home | - | - | - | - | - | - | - |
| away | 1 | - | 1 | - | 2 | - | - |
| overall | 1 | - | 1 | - | 2 | - | - |
| Relegation Premier Liga | Matches | W | D | L | |
|
|
| home | 1 | 1 | - | - | - | - | - |
| away | 1 | - | 1 | - | 2 | - | - |
| overall | 2 | 1 | 1 | - | 2 | - | - |
| Premier Liga | Home | - | Guest | |
|
|
Results |
| 27/04/08 | FK Tom Tomsk | - | FK Saturn | 2 | - | - | 0:1 |
| 21/09/08 | FK Tom Tomsk | - | Akhmat Grozny | 3 | - | - | 2:0 |
| 02/11/08 | Spartak Nalchik | - | FK Tom Tomsk | 2 | - | - | 1:1 |
| 18/04/09 | FK Tom Tomsk | - | Spartak Nalchik | 3 | - | - | 1:0 |
| 04/04/10 | FK Tom Tomsk | - | Spartak Moskva | 4 | - | - | 2:2 |
| 14/04/12 | FK Tom Tomsk | - | Akhmat Grozny | 2 | - | - | 3:0 |
| 03/05/14 | FK Tom Tomsk | - | Spartak Moskva | 1 | - | 1 | 2:1 |
| 27/04/17 | Anzhi Makhachkala | - | FK Tom Tomsk | 7 | - | - | 3:3 |
| 1. Division | Home | - | Guest | |
|
|
Results |
| 12/05/18 | Kuban Krasnodar (1928-2018) | - | FK Tom Tomsk | 2 | - | - | 3:3 |
| Relegation Premier Liga | Home | - | Guest | |
|
|
Results |
| 22/05/14 | FK Tom Tomsk | - | FK Ufa | - | - | - | 3:1 |
| 07/06/15 | FK Ural | - | FK Tom Tomsk | 2 | - | - | 0:0 |
Russia