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| 06/08/2013 | 17:00 | Tulevik Viljandi | - | FC Flora | 1:2 | |
| 18:30 | JK Piraaja Tallinn | - | FC Kuressaare | 0:1 | ||
| 07/08/2013 | 17:00 | Pärnu Linnameeskond | - | FC Otepää | 4:1 | |
| 17:00 | JK Narva Trans | - | Tartu FC Santos | 3:5 pso | ||
| 17:30 | Tartu SK 10 Premium | - | Tallinna JK Legion | 2:1 | ||
| 17:30 | JK Welco Elekter | - | FC Ararat TTÜ | 2:1 | ||
| 08/08/2013 | 17:30 | Nõmme United | - | Jõhvi FC Lokomotiv | 2:6 | |
| 13/08/2013 | 17:30 | JK Tammeka II | - | FC Infonet II | 2:1 | |
| 15/08/2013 | 17:30 | Puuma Tallinn | - | FC Järva-Jaani | 8:1 | |
| 18:00 | Saue JK Laagri | - | JK Väätsa Vald | 4:0 | ||
| 20/08/2013 | 14:00 | Saaremaa JK | - | FC Tartu | 1:2 | |
| 28/08/2013 | 17:30 | JK Tammeka | - | HÜJK Emmaste | 1:3 | |
| 04/09/2013 | 16:00 | Paide Linnameeskond | - | Tartu SK 10 Premium II | 6:1 | |
| 18:00 | Raasiku FC Joker | - | Kiviõli FC Irbis | 1:5 | ||
| 11/09/2013 | 17:30 | FC Infonet | - | Kohtla-Järve JK Järve | 6:0 | |
| 22/10/2013 | 17:30 | JK Nõmme Kalju | - | FC Levadia | 1:3 |
