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| 1st(1st leg) | MFK Košice | - | Slovan Bratislava | 0:3 (0:0) | ||
| 2nd (2nd leg) | Slovan Bratislava | - | MFK Košice | 3:1 (3:1) | ||
| 1st(1st leg): 09/04/2013 15:30 | 2nd (2nd leg): 16/04/2013 16:30 | Winner: Slovan Bratislava | ||||
| 1st(1st leg) | MŠK Žilina | - | Spartak Trnava | 3:2 (3:1) | ||
| 2nd (2nd leg) | Spartak Trnava | - | MŠK Žilina | 1:1 (0:0) | ||
| 1st(1st leg): 09/04/2013 15:30 | 2nd (2nd leg): 16/04/2013 15:30 | Winner: MŠK Žilina | ||||
