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| 22/09/2006 | 19:45 | Cambridge United | - | Aldershot Town | 2:0 | |
| 23/09/2006 | 15:00 | Halifax Town | - | Forest Green Rovers | 2:2 | |
| 15:00 | York City | - | Southport FC | 2:2 | ||
| 15:00 | Exeter City | - | Stevenage Borough FC | 1:1 | ||
| 15:00 | Burton Albion | - | Northwich Victoria | 2:0 | ||
| 15:00 | Morecambe FC | - | Kidderminster Harriers | 0:1 | ||
| 15:00 | St. Albans City | - | Gravesend & Northfleet | 2:3 | ||
| 15:00 | Woking FC | - | Rushden & Diamonds | 3:0 | ||
| 15:00 | Dagenham & Redbridge | - | Weymouth FC | 4:1 | ||
| 15:00 | Stafford Rangers | - | Oxford United | 0:1 | ||
| 15:00 | Crawley Town | - | Grays Athletic | 0:1 | ||
| 15:00 | Altrincham FC | - | Tamworth FC | 2:0 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Oxford United | 11 | 9 | 2 | 0 | 20:5 | 15 | 29 |
| 2 |
|
Dagenham & Redbridge | 11 | 7 | 2 | 2 | 24:10 | 14 | 23 |
| 3 |
|
York City | 11 | 6 | 3 | 2 | 14:12 | 2 | 21 |
| 4 |
|
Grays Athletic | 11 | 6 | 2 | 3 | 19:8 | 11 | 20 |
| 5 |
|
Aldershot Town | 11 | 6 | 2 | 3 | 20:13 | 7 | 20 |
| 6 |
|
Weymouth FC | 11 | 6 | 2 | 3 | 12:11 | 1 | 20 |
| 7 |
|
Gravesend & Northfleet | 11 | 5 | 4 | 2 | 20:13 | 7 | 19 |
| 8 |
|
Woking FC | 11 | 5 | 3 | 3 | 18:14 | 4 | 18 |
| 9 |
|
Burton Albion | 11 | 5 | 3 | 3 | 13:10 | 3 | 18 |
| 10 |
|
Exeter City | 11 | 4 | 5 | 2 | 14:10 | 4 | 17 |
| 11 |
|
Rushden & Diamonds | 11 | 4 | 3 | 4 | 13:11 | 2 | 15 |
| 12 |
|
Northwich Victoria | 11 | 5 | 0 | 6 | 13:18 | -5 | 15 |
| 13 |
|
Morecambe FC | 11 | 3 | 4 | 4 | 13:14 | -1 | 13 |
| 14 |
|
Altrincham FC | 11 | 4 | 1 | 6 | 13:20 | -7 | 13 |
| 15 |
|
Stafford Rangers | 11 | 3 | 4 | 4 | 7:18 | -11 | 13 |
| 16 |
|
Kidderminster Harriers | 11 | 3 | 3 | 5 | 7:12 | -5 | 12 |
| 17 |
|
Tamworth FC | 11 | 3 | 2 | 6 | 9:20 | -11 | 11 |
| 18 |
|
St. Albans City | 11 | 3 | 1 | 7 | 15:19 | -4 | 10 |
| 19 |
|
Halifax Town | 11 | 2 | 4 | 5 | 10:14 | -4 | 10 |
| 20 |
|
Southport FC | 11 | 2 | 4 | 5 | 11:17 | -6 | 10 |
| 21 |
|
Stevenage Borough FC | 11 | 2 | 3 | 6 | 19:21 | -2 | 9 |
| 22 |
|
Cambridge United | 11 | 2 | 3 | 6 | 9:14 | -5 | 9 |
| 23 |
|
Forest Green Rovers | 11 | 0 | 5 | 6 | 11:18 | -7 | 5 |
| 24 |
|
Crawley Town | 11 | 4 | 1 | 6 | 13:15 | -2 | 3 |
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