6. Round | 26/09/1999 | Waldhof Mannheim | - | FC St. Pauli | 1:3 | ||||
7. Round | 01/10/1999 | FC St. Pauli | - | Kickers Offenbach | 1:1 | ||||
8. Round | 15/10/1999 | Fortuna Köln | - | FC St. Pauli | 2:0 | ||||
10. Round | 29/10/1999 | 1. FC Nürnberg | - | FC St. Pauli | 2:2 | ||||
11. Round | 05/11/1999 | FC St. Pauli | - | Chemnitzer FC | 0:0 | ||||
12. Round | 19/11/1999 | Hannover 96 | - | FC St. Pauli | 1:2 | ||||
13. Round | 28/11/1999 | FC St. Pauli | - | Karlsruher SC | 3:1 | ||||
15. Round | 12/12/1999 | FC St. Pauli | - | Energie Cottbus | 1:0 | ||||
16. Round | 15/12/1999 | FC St. Pauli | - | 1. FC Köln | 1:2 | ||||
17. Round | 19/12/1999 | Rot-Weiß Oberhausen | - | FC St. Pauli | 2:2 | ||||
19. Round | 20/02/2000 | FC St. Pauli | - | Stuttgarter Kickers | 2:1 | ||||
20. Round | 25/02/2000 | VfL Bochum | - | FC St. Pauli | 2:0 | ||||
21. Round | 05/03/2000 | FC St. Pauli | - | TeBe Berlin | 1:1 | ||||
22. Round | 10/03/2000 | Bor. Mönchengladbach | - | FC St. Pauli | 2:1 | ||||
31. Round | 12/05/2000 | FC St. Pauli | - | Alemannia Aachen | 2:1 |