1. Round | 31/07/2016 | 1. FC Magdeburg | - | Fortuna Köln | 0:3 | ||||
3. Round | 09/08/2016 | 1. FC Magdeburg | - | SC Paderborn 07 | 3:0 | ||||
4. Round | 13/08/2016 | VfL Osnabrück | - | 1. FC Magdeburg | 3:2 | ||||
5. Round | 26/08/2016 | 1. FC Magdeburg | - | MSV Duisburg | 1:2 | ||||
2. Round | 01/09/2016 | FSV Zwickau | - | 1. FC Magdeburg | 0:0 | ||||
6. Round | 10/09/2016 | 1. FSV Mainz 05 II | - | 1. FC Magdeburg | 1:0 | ||||
8. Round | 21/09/2016 | 1. FC Magdeburg | - | Werder Bremen II | 2:0 | ||||
9. Round | 25/09/2016 | SV Wehen Wiesbaden | - | 1. FC Magdeburg | 0:3 | ||||
10. Round | 01/10/2016 | 1. FC Magdeburg | - | Holstein Kiel | 1:0 | ||||
21. Round | 05/02/2017 | 1. FC Magdeburg | - | FSV Zwickau | 1:1 | ||||
22. Round | 11/02/2017 | SC Paderborn 07 | - | 1. FC Magdeburg | 1:1 | ||||
23. Round | 18/02/2017 | 1. FC Magdeburg | - | VfL Osnabrück | 3:0 |