2. Round | 22/08/2008 | SpVgg Greuther Fürth | - | FC St. Pauli | 5:2 | ||||
3. Round | 31/08/2008 | FC St. Pauli | - | Rot-Weiß Oberhausen | 4:1 | ||||
4. Round | 12/09/2008 | 1. FC Kaiserslautern | - | FC St. Pauli | 4:1 | ||||
5. Round | 19/09/2008 | FC St. Pauli | - | TSV 1860 München | 1:0 | ||||
6. Round | 26/09/2008 | Hansa Rostock | - | FC St. Pauli | 3:0 | ||||
7. Round | 05/10/2008 | FC St. Pauli | - | Alemannia Aachen | 3:2 | ||||
9. Round | 24/10/2008 | FC St. Pauli | - | SV Wehen Wiesbaden | 2:0 | ||||
11. Round | 02/11/2008 | FC St. Pauli | - | 1. FC Nürnberg | 1:0 | ||||
12. Round | 10/11/2008 | SC Freiburg | - | FC St. Pauli | 2:0 | ||||
14. Round | 23/11/2008 | 1. FSV Mainz 05 | - | FC St. Pauli | 2:2 | ||||
24. Round | 15/03/2009 | Alemannia Aachen | - | FC St. Pauli | 1:3 | ||||
25. Round | 22/03/2009 | FC St. Pauli | - | FC Augsburg | 1:1 |