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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 21 | 14 | 2 | 5 | 28:12 | 16 | 44 |
| 2 |
|
FC St. Pauli | 21 | 14 | 1 | 6 | 25:14 | 11 | 43 |
| 3 |
|
Fortuna Düsseldorf | 21 | 12 | 6 | 3 | 28:12 | 16 | 42 |
| 4 |
|
Eintracht Frankfurt | 21 | 10 | 8 | 3 | 25:12 | 13 | 38 |
| 5 |
|
SC Paderborn 07 | 21 | 11 | 5 | 5 | 20:13 | 7 | 38 |
| 6 |
|
TSV 1860 München | 21 | 9 | 7 | 5 | 23:15 | 8 | 34 |
| 7 |
|
1. FC Union Berlin | 21 | 8 | 5 | 8 | 20:19 | 1 | 29 |
| 8 |
|
Eintracht Braunschweig | 21 | 6 | 10 | 5 | 11:11 | 0 | 28 |
| 9 |
|
MSV Duisburg | 21 | 7 | 7 | 7 | 15:16 | -1 | 28 |
| 10 |
|
Dynamo Dresden | 21 | 6 | 6 | 9 | 19:27 | -8 | 24 |
| 11 |
|
Erzgebirge Aue | 21 | 5 | 8 | 8 | 12:16 | -4 | 23 |
| 12 |
|
Energie Cottbus | 21 | 5 | 7 | 9 | 14:17 | -3 | 22 |
| 13 |
|
FSV Frankfurt | 21 | 5 | 7 | 9 | 13:22 | -9 | 22 |
| 14 |
|
FC Ingolstadt 04 | 21 | 5 | 7 | 9 | 12:24 | -12 | 22 |
| 15 |
|
Karlsruher SC | 21 | 5 | 4 | 12 | 10:19 | -9 | 19 |
| 16 |
|
VfL Bochum | 21 | 3 | 9 | 9 | 12:19 | -7 | 18 |
| 17 |
|
Alemannia Aachen | 21 | 2 | 11 | 8 | 9:18 | -9 | 17 |
| 18 |
|
Hansa Rostock | 21 | 3 | 8 | 10 | 12:22 | -10 | 17 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
