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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 23 | 15 | 3 | 5 | 32:13 | 19 | 48 |
| 2 |
|
FC St. Pauli | 23 | 14 | 3 | 6 | 25:14 | 11 | 45 |
| 3 |
|
Fortuna Düsseldorf | 23 | 12 | 7 | 4 | 28:13 | 15 | 43 |
| 4 |
|
SC Paderborn 07 | 23 | 12 | 6 | 5 | 23:14 | 9 | 42 |
| 5 |
|
Eintracht Frankfurt | 23 | 11 | 8 | 4 | 29:15 | 14 | 41 |
| 6 |
|
TSV 1860 München | 23 | 11 | 7 | 5 | 25:15 | 10 | 40 |
| 7 |
|
Eintracht Braunschweig | 23 | 6 | 12 | 5 | 11:11 | 0 | 30 |
| 8 |
|
1. FC Union Berlin | 23 | 8 | 5 | 10 | 22:23 | -1 | 29 |
| 9 |
|
MSV Duisburg | 23 | 7 | 8 | 8 | 15:18 | -3 | 29 |
| 10 |
|
Dynamo Dresden | 23 | 7 | 7 | 9 | 22:28 | -6 | 28 |
| 11 |
|
FC Ingolstadt 04 | 23 | 6 | 8 | 9 | 14:24 | -10 | 26 |
| 12 |
|
Energie Cottbus | 23 | 6 | 7 | 10 | 15:19 | -4 | 25 |
| 13 |
|
Karlsruher SC | 23 | 7 | 4 | 12 | 13:19 | -6 | 25 |
| 14 |
|
Erzgebirge Aue | 23 | 5 | 9 | 9 | 12:17 | -5 | 24 |
| 15 |
|
FSV Frankfurt | 23 | 5 | 7 | 11 | 14:27 | -13 | 22 |
| 16 |
|
VfL Bochum | 23 | 4 | 9 | 10 | 16:25 | -9 | 21 |
| 17 |
|
Alemannia Aachen | 23 | 2 | 13 | 8 | 9:18 | -9 | 19 |
| 18 |
|
Hansa Rostock | 23 | 3 | 9 | 11 | 12:24 | -12 | 18 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
