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| Tables | Home | Away | First round | Second round | » First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 29 | 18 | 8 | 3 | 27:8 | 19 | 62 |
| 2 |
|
Eintracht Frankfurt | 29 | 16 | 7 | 6 | 32:12 | 20 | 55 |
| 3 |
|
FC St. Pauli | 29 | 12 | 12 | 5 | 22:13 | 9 | 48 |
| 4 |
|
1. FC Union Berlin | 29 | 12 | 10 | 7 | 20:18 | 2 | 46 |
| 5 |
|
TSV 1860 München | 29 | 12 | 8 | 9 | 23:19 | 4 | 44 |
| 6 |
|
Eintracht Braunschweig | 29 | 11 | 10 | 8 | 21:16 | 5 | 43 |
| 7 |
|
Dynamo Dresden | 29 | 9 | 14 | 6 | 20:17 | 3 | 41 |
| 8 |
|
Fortuna Düsseldorf | 29 | 9 | 12 | 8 | 21:15 | 6 | 39 |
| 9 |
|
SC Paderborn 07 | 29 | 8 | 14 | 7 | 16:15 | 1 | 38 |
| 10 |
|
VfL Bochum | 29 | 8 | 13 | 8 | 19:20 | -1 | 37 |
| 11 |
|
Alemannia Aachen | 29 | 7 | 15 | 7 | 15:15 | 0 | 36 |
| 12 |
|
Energie Cottbus | 29 | 8 | 11 | 10 | 10:18 | -8 | 35 |
| 13 |
|
FSV Frankfurt | 29 | 8 | 10 | 11 | 19:26 | -7 | 34 |
| 14 |
|
MSV Duisburg | 29 | 5 | 14 | 10 | 15:19 | -4 | 29 |
| 15 |
|
FC Ingolstadt 04 | 29 | 5 | 13 | 11 | 14:21 | -7 | 28 |
| 16 |
|
Hansa Rostock | 29 | 4 | 14 | 11 | 10:18 | -8 | 26 |
| 17 |
|
Erzgebirge Aue | 29 | 1 | 16 | 12 | 11:26 | -15 | 19 |
| 18 |
|
Karlsruher SC | 29 | 3 | 9 | 17 | 13:32 | -19 | 18 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
