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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 25 | 15 | 6 | 4 | 27:12 | 15 | 51 |
| 2 |
|
1. FC Köln | 25 | 13 | 7 | 5 | 22:11 | 11 | 46 |
| 3 |
|
1. FC Kaiserslautern | 25 | 10 | 10 | 5 | 23:13 | 10 | 40 |
| 4 |
|
SC Paderborn 07 | 25 | 12 | 2 | 11 | 29:25 | 4 | 38 |
| 5 |
|
TSV 1860 München | 25 | 10 | 8 | 7 | 17:15 | 2 | 38 |
| 6 |
|
Erzgebirge Aue | 25 | 8 | 11 | 6 | 18:17 | 1 | 35 |
| 7 |
|
1. FC Union Berlin | 25 | 10 | 5 | 10 | 21:23 | -2 | 35 |
| 8 |
|
FC St. Pauli | 25 | 8 | 9 | 8 | 18:20 | -2 | 33 |
| 9 |
|
Dynamo Dresden | 25 | 7 | 12 | 6 | 17:20 | -3 | 33 |
| 10 |
|
Karlsruher SC | 25 | 8 | 8 | 9 | 18:17 | 1 | 32 |
| 11 |
|
Arminia Bielefeld | 25 | 8 | 7 | 10 | 23:26 | -3 | 31 |
| 12 |
|
FC Ingolstadt 04 | 25 | 7 | 9 | 9 | 14:16 | -2 | 30 |
| 13 |
|
Fortuna Düsseldorf | 25 | 7 | 9 | 9 | 15:20 | -5 | 30 |
| 14 |
|
VfR Aalen | 25 | 5 | 13 | 7 | 14:13 | 1 | 28 |
| 15 |
|
VfL Bochum | 25 | 6 | 9 | 10 | 11:17 | -6 | 27 |
| 16 |
|
FSV Frankfurt | 25 | 6 | 8 | 11 | 19:22 | -3 | 26 |
| 17 |
|
SV Sandhausen | 25 | 5 | 10 | 10 | 9:18 | -9 | 25 |
| 18 |
|
Energie Cottbus | 25 | 4 | 9 | 12 | 11:21 | -10 | 21 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
