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| 16/09/2016 | 17:30 | 1. FC Nürnberg II | - | SpVgg Bayreuth | 0:5 (0:2) | |
| 18:00 | SV Seligenporten | - | SpVgg Unterhaching | 0:0 (0:0) | ||
| 18:00 | Bayern München II | - | FC Memmingen | 2:1 (2:0) | ||
| 17/09/2016 | 13:00 | SpVgg Bayern Hof | - | SpVgg Greuther Fürth II | 1:2 (1:1) | |
| 13:00 | FC Augsburg II | - | VfR Garching | 1:1 (1:0) | ||
| 13:00 | Wacker Burghausen | - | TSV Buchbach | 3:0 (1:0) | ||
| 13:00 | FV Illertissen | - | FC Ingolstadt 04 II | 2:5 (0:1) | ||
| 13:00 | SV Schalding-Heining | - | TSV 1860 Rosenheim | 3:0 (0:0) | ||
| 18:00 | 1. FC Schweinfurt 05 | - | TSV 1860 München II | 1:2 (1:0) |
| » Tables | Home | Away | First round | Second round | First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 11 | 9 | 2 | 0 | 32:7 | 25 | 29 |
| 2 |
|
Bayern München II | 11 | 6 | 4 | 1 | 18:11 | 7 | 22 |
| 3 |
|
FC Augsburg II | 11 | 4 | 5 | 2 | 24:13 | 11 | 17 |
| 4 |
|
1. FC Nürnberg II | 11 | 5 | 2 | 4 | 23:22 | 1 | 17 |
| 5 |
|
VfR Garching | 11 | 5 | 2 | 4 | 19:19 | 0 | 17 |
| 6 |
|
1. FC Schweinfurt 05 | 11 | 5 | 2 | 4 | 17:19 | -2 | 17 |
| 7 |
|
SpVgg Greuther Fürth II | 11 | 4 | 3 | 4 | 17:14 | 3 | 15 |
| 8 |
|
SpVgg Bayreuth | 11 | 4 | 3 | 4 | 20:19 | 1 | 15 |
| 9 |
|
FV Illertissen | 11 | 4 | 2 | 5 | 17:20 | -3 | 14 |
| 10 |
|
FC Memmingen | 11 | 3 | 4 | 4 | 19:15 | 4 | 13 |
| 11 |
|
Wacker Burghausen | 11 | 3 | 4 | 4 | 18:20 | -2 | 13 |
| 12 |
|
TSV 1860 Rosenheim | 11 | 4 | 1 | 6 | 9:14 | -5 | 13 |
| 13 |
|
SV Schalding-Heining | 11 | 2 | 5 | 4 | 16:16 | 0 | 11 |
| 14 |
|
FC Ingolstadt 04 II | 11 | 2 | 5 | 4 | 18:22 | -4 | 11 |
| 15 |
|
SV Seligenporten | 11 | 3 | 2 | 6 | 13:32 | -19 | 11 |
| 16 |
|
TSV Buchbach | 11 | 2 | 3 | 6 | 13:21 | -8 | 9 |
| 17 |
|
SpVgg Bayern Hof | 11 | 1 | 1 | 9 | 15:30 | -15 | 4 |
| 18 |
|
TSV 1860 München II | 11 | 7 | 2 | 2 | 0:0 | -4 | -40 |
| Playoffs | |
| Playoffs | |
| Relegation |
