| Period | Manager | Country | born |
| 01/07/2023 - 30/06/2024 | Florian Kästner |
|
02/12/1998 |
| 10/02/2023 - 30/06/2023 | Christian Kucharz |
|
28/03/1980 |
| 01/07/2022 - 09/02/2023 | Steffen Beck |
|
19/10/1963 |
| 01/07/2020 - 30/06/2022 | Anne Pochert |
|
04/02/1986 |
| 01/07/2019 - 30/06/2020 | Chris Heck |
|
11/02/1974 |
| 01/07/2018 - 30/06/2019 | Steffen Beck |
|
19/10/1963 |
| 21/11/2016 - 30/06/2018 | Katja Greulich |
|
25/03/1985 |
| 04/11/2016 - 20/11/2016 | Steffen Beck |
|
19/10/1963 |
| 01/07/2016 - 04/11/2016 | Christian Franz-Pohlmann |
|
15/08/1980 |
| 30/01/2012 - 30/06/2016 | Daniel Kraus |
|
11/05/1984 |
| 01/07/2011 - 29/01/2012 | Martina Voss-Tecklenburg |
|
22/12/1967 |
| 29/12/2010 - 30/06/2011 | Konrad Weise |
|
17/08/1951 |
| 04/11/2010 - 28/12/2010 | Daniel Kraus |
|
11/05/1984 |
| 01/07/2010 - 03/11/2010 | Thorsten Zaunmüller |
|
11/05/1970 |
| 01/07/2003 - 30/06/2010 | Heidi Vater |
|
07/07/1966 |
![FC Carl Zeiss Jena [Women]](https://s.hs-data.com/bilder/wappen/mittel/2382.gif?fallback=png "FC Carl Zeiss Jena [Women]")
![FC Carl Zeiss Jena II [Women]](https://s.hs-data.com/bilder/wappen/mini/12519.gif?fallback=png "FC Carl Zeiss Jena II [Women]"){kind=small}
![FC Carl Zeiss Jena [Youth]](https://s.hs-data.com/bilder/wappen/mini/10850.gif?fallback=png "FC Carl Zeiss Jena [Youth]"){kind=small}
![FC Carl Zeiss Jena [Youth B]](https://s.hs-data.com/bilder/wappen/mini/14892.gif?fallback=png "FC Carl Zeiss Jena [Youth B]"){kind=small}
![FC Carl Zeiss Jena II [Youth B]](https://s.hs-data.com/bilder/wappen/mini/37759.gif?fallback=png "FC Carl Zeiss Jena II [Youth B]"){kind=small}
![FC Carl Zeiss Jena [Youth B Women]](https://s.hs-data.com/bilder/wappen/mini/13944.gif?fallback=png "FC Carl Zeiss Jena [Youth B Women]"){kind=small}
![FC Carl Zeiss Jena [Youth C]](https://s.hs-data.com/bilder/wappen/mini/20651.gif?fallback=png "FC Carl Zeiss Jena [Youth C]"){kind=small}