| 2. Round | 19/03/2017 | Gaz Metan Mediaş | - | FC Botoşani | 0:0 | ||||
| 3. Round | 31/03/2017 | FC Botoşani | - | ASA Târgu Mureş | 2:0 |  |
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| 4. Round | 05/04/2017 | FC Botoşani | - | FC Voluntari | 3:0 | ||||
| 5. Round | 08/04/2017 | CSM Politehnica Iași | - | FC Botoşani | 2:1 | ||||
| 6. Round | 14/04/2017 | FC Botoşani | - | Concordia Chiajna | 1:1 | ||||
| 7. Round | 21/04/2017 | Pandurii Târgu Jiu | - | FC Botoşani | 1:1 | ||||
| 8. Round | 01/05/2017 | ACS Poli Timişoara | - | FC Botoşani | 1:1 | ||||
| 9. Round | 07/05/2017 | FC Botoşani | - | Gaz Metan Mediaş | 0:0 | ||||
| 10. Round | 15/05/2017 | ASA Târgu Mureş | - | FC Botoşani | 0:2 | ||||
| 11. Round | 21/05/2017 | FC Voluntari | - | FC Botoşani | 1:0 | ||||
| 12. Round | 25/05/2017 | FC Botoşani | - | CSM Politehnica Iași | 0:1 | ||||
| 13. Round | 29/05/2017 | Concordia Chiajna | - | FC Botoşani | 2:1 | ||||
| 14. Round | 04/06/2017 | FC Botoşani | - | Pandurii Târgu Jiu | 2:1 |
Germany