| 1. Round | 05/07/2012 | Pyunik FC | - | FK Zeta | 0:3 | ||||
| 1. Round | 12/07/2012 | FK Zeta | - | Pyunik FC | 1:2 |  |
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| 2. Round | 19/07/2012 | JJK Jyväskylä | - | FK Zeta | 3:2 | ||||
| 2. Round | 26/07/2012 | FK Zeta | - | JJK Jyväskylä | 1:0 | |
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| 3. Round | 02/08/2012 | FK Sarajevo | - | FK Zeta | 2:1 | ||||
| 3. Round | 09/08/2012 | FK Zeta | - | FK Sarajevo | 1:0 | ||||
| Play-offs | 23/08/2012 | FK Zeta | - | PSV Eindhoven | 0:5 | ||||
| Play-offs | 30/08/2012 | PSV Eindhoven | - | FK Zeta | 9:0 |
Montenegro