| 21. Round | 19/02/2017 | Panetolikos | - | Platanias Chanion | 1:2 |  |
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| 22. Round | 25/02/2017 | AO Kerkyra | - | Panetolikos | 0:0 | ||||
| 23. Round | 04/03/2017 | Panetolikos | - | Levadiakos | 2:0 | ||||
| 24. Round | 11/03/2017 | PAS Giannina | - | Panetolikos | 0:0 | ||||
| 26. Round | 02/04/2017 | Panetolikos | - | Asteras Tripolis | 1:1 | |
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| 27. Round | 05/04/2017 | Xanthi FC | - | Panetolikos | 3:0 | ||||
| 28. Round | 09/04/2017 | Panetolikos | - | Veria FC | 1:0 | |
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| 29. Round | 23/04/2017 | AEP Iraklis FC | - | Panetolikos | 2:1 | ||||
| 30. Round | 30/04/2017 | Panetolikos | - | Olympiakos Piraeus | 0:2 |
Spain