| 25. Round | 12/03/2016 | Enisey Krasnoyarsk | - | FK Radian-Baikal Irkutsk | 4:0 |  |
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| 26. Round | 16/03/2016 | FK Tyumen | - | FK Radian-Baikal Irkutsk | 3:1 |  |
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| 27. Round | 20/03/2016 | FK Radian-Baikal Irkutsk | - | Luch-Energiya Vladivostok | 0:1 | ||||
| 28. Round | 27/03/2016 | SKA-Energiya Khabarovsk | - | FK Radian-Baikal Irkutsk | 0:0 | ||||
| 29. Round | 03/04/2016 | FK Radian-Baikal Irkutsk | - | Sokol Saratov | 0:3 | ||||
| 30. Round | 07/04/2016 | Volga Nizhniy Novgorod | - | FK Radian-Baikal Irkutsk | 4:1 | |
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| 31. Round | 11/04/2016 | FK Radian-Baikal Irkutsk | - | Sibir Novosibirsk | 0:6 | ||||
| 32. Round | 17/04/2016 | Baltika Kaliningrad | - | FK Radian-Baikal Irkutsk | 3:1 | ||||
| 33. Round | 25/04/2016 | FK Radian-Baikal Irkutsk | - | FK Kamaz | 2:1 | ||||
| 34. Round | 02/05/2016 | Spartak Moskva 2 | - | FK Radian-Baikal Irkutsk | 2:0 | ||||
| 35. Round | 06/05/2016 | FK Radian-Baikal Irkutsk | - | Fakel Voronezh | 0:2 | ||||
| 36. Round | 10/05/2016 | FK Radian-Baikal Irkutsk | - | FK Torpedo Armavir | 1:2 | |
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| 37. Round | 15/05/2016 | Zenit St. Petersburg 2 | - | FK Radian-Baikal Irkutsk | 4:3 | ||||
| 38. Round | 21/05/2016 | FK Radian-Baikal Irkutsk | - | Arsenal Tula | 0:2 | |
Russia