| 21. Round | 13/02/2000 | Perth Glory | - | Melbourne Knights | 2:2 | ||||
| 22. Round | 18/02/2000 | Adelaide City Force | - | Perth Glory | 1:2 | ||||
| 23. Round | 27/02/2000 | Perth Glory | - | Canberra Cosmos | 3:2 | ||||
| 24. Round | 04/03/2000 | Brisbane Strikers | - | Perth Glory | 1:3 |  |
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| 25. Round | 12/03/2000 | Perth Glory | - | Parramatta Power | 2:1 | |
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| 26. Round | 19/03/2000 | Melbourne Knights | - | Perth Glory | 1:0 | ||||
| 27. Round | 24/03/2000 | Carlton Blues | - | Perth Glory | 3:1 | ||||
| 17. Round | 26/03/2000 | Perth Glory | - | Auckland Football Kingz | 3:1 | |
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| 28. Round | 02/04/2000 | Perth Glory | - | Sydney United Pumas | 2:0 | ||||
| 29. Round | 09/04/2000 | South Melbourne Lakers | - | Perth Glory | 1:2 | ||||
| 30. Round | 16/04/2000 | Perth Glory | - | Newcastle Breakers | 1:2 | |
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| 31. Round | 22/04/2000 | Marconi-Fairfield Stallions | - | Perth Glory | 3:2 | ||||
| 32. Round | 25/04/2000 | Perth Glory | - | Sydney Olympic Lions | 1:0 | ||||
| 33. Round | 30/04/2000 | Wollongong City Wolves | - | Perth Glory | 0:1 | ||||
| 34. Round | 07/05/2000 | Perth Glory | - | Northern Spirit | 1:0 |
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