| 1. Round | 25/08/2012 | Levadiakos | - | Panathinaikos | 0:1 | ||||
| 2. Round | 31/08/2012 | Panathinaikos | - | PAS Giannina | 1:1 |  |
|||
| 3. Round | 15/09/2012 | Panthrakikos | - | Panathinaikos | 1:0 | ||||
| 4. Round | 24/09/2012 | Panathinaikos | - | Atromitos | 1:1 | ||||
| 5. Round | 30/09/2012 | Panathinaikos | - | Asteras Tripolis | 0:0 | ||||
| 6. Round | 07/10/2012 | Skoda Xanthi | - | Panathinaikos | 1:2 | ||||
| 7. Round | 21/10/2012 | Panathinaikos | - | Aris Saloniki | 1:1 | ||||
| 10. Round | 12/11/2012 | AO Kerkyra | - | Panathinaikos | 0:0 | ||||
| 11. Round | 18/11/2012 | Panathinaikos | - | PAOK Saloniki | 2:0 | ||||
| 12. Round | 25/11/2012 | Platanias Chanion | - | Panathinaikos | 2:1 | ||||
| 16. Round | 05/01/2013 | Panathinaikos | - | Levadiakos | 1:2 | ||||
| 17. Round | 13/01/2013 | PAS Giannina | - | Panathinaikos | 0:0 | ||||
| 23. Round | 23/02/2013 | Panathinaikos | - | OFI Heraklion | 3:1 | ||||
| 24. Round | 03/03/2013 | AEK Athen | - | Panathinaikos | 0:2 | ||||
| 25. Round | 09/03/2013 | Panathinaikos | - | AO Kerkyra | 1:0 | ||||
| 26. Round | 17/03/2013 | PAOK Saloniki | - | Panathinaikos | 2:0 |
Uruguay
